BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925128
Length=835
Score E
Sequences producing significant alignments: (Bits) Value
AT1G59640.2 | Symbols: ZCW32, BPE, BPEp | BIG PETAL P | chr1:21... 1051 0.0
> AT1G59640.2 | Symbols: ZCW32, BPE, BPEp | BIG PETAL P | chr1:21909180-21911201
REVERSE LENGTH=1658
Length=1658
Score = 1051 bits (569), Expect = 0.0
Identities = 639/674 (95%), Gaps = 0/674 (0%)
Strand=Plus/Plus
Query 10 TGATTTAGTTGATGGATCCGAGTGGGATGATGAACGAAGGAGGACCGTTTAATCTAGCGG 69
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 161 TGATTAAGTTGATGGATCCGAGTGGGATGATGAACGAAGGAGGACCGTTTAATCTAGCGG 220
Query 70 AGATCTGGCAGTTTCCGTTGAACGGAGTTTCAACCGCCGGAGATTCTTCGAGAAGAAGCT 129
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 221 AGATCTGGCAGTTTCCGTTGAACGGAGTTTCAACCGCCGGAGATTCTTCTAGAAGAAGCT 280
Query 130 TCGCTGGACCGAATCAGTTCGGAGATACCGATCTAACCGCCGCTGCTAACGGCGATCCGG 189
||| |||||||||||||||||| ||| | ||||||||| | ||||||||||| ||||| |
Sbjct 281 TCGTTGGACCGAATCAGTTCGGTGATGCTGATCTAACCACAGCTGCTAACGGTGATCCAG 340
Query 190 CGCGTATGAGTCACGTACTGTCGCAGGCCGTTATTGAAGGTATCTCCGGCGCGTGGAAAC 249
||||||||||||||| |||| ||||| ||||||||||||||||||||||| |||||||
Sbjct 341 CGCGTATGAGTCACGCGTTGTCTCAGGCGGTTATTGAAGGTATCTCCGGCGCTTGGAAAC 400
Query 250 GGAGGGAAGATGAGTCTAAGTCGGCGAAGATCGTCTCCATAAATGGCGCGAGTGAAGGTG 309
||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||
Sbjct 401 GGAGGGAAGATGAGTCTAAGTCGGCGAAGATCGTCTCCACCATTGGCGCTAGTGAAGGTG 460
Query 310 AGAACAAAAGACAGAAGATAGATGAAGTGTGTGATGGGAAAGCGGAAGCGGAATCGCTAG 369
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 461 AGAACAAAAGACAGAAGATAGATGAAGTGTGTGATGGGAAAGCAGAAGCAGAATCGCTAG 520
Query 370 GAACAGAGACGGAACAAAAGAAGCTACAAATCGAACCGACGAAAGATTATATTCATGTTC 429
|||||||||||||||||||||||| ||| || ||||| ||||||||||||||||||||||
Sbjct 521 GAACAGAGACGGAACAAAAGAAGCAACAGATGGAACCAACGAAAGATTATATTCATGTTC 580
Query 430 GAGCAAGAAGAGGTCAAGCTACTGATAGTCACAGTTTAGCTGAAAGAGCGAGAAGAGAGA 489
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 581 GAGCTAGAAGAGGTCAAGCTACTGATAGTCACAGTTTAGCTGAAAGAGCGAGAAGAGAGA 640
Query 490 AAATAAGCGAACGGATGAAAATCTTGCAAGATCTTGTACCGGGATGTAACAAGGTTATTG 549
||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 641 AAATAAGTGAGCGGATGAAAATCTTGCAAGATCTTGTTCCGGGATGTAACAAGGTTATTG 700
Query 550 GAAAAGCACTTGTTCTTGATGAGATAATCAACTATATACAATCATTGCAACGTCAAGTTG 609
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 701 GAAAAGCACTTGTTCTAGATGAGATAATTAACTATATACAATCATTGCAACGTCAAGTTG 760
Query 610 AGTTCTTATCGATGAAGCTTGAAGCGGTCAATTCAAGAATGAACCCTGGTATTGAGGTTT 669
||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||
Sbjct 761 AGTTCTTATCGATGAAGCTTGAAGCAGTCAACTCAAGAATGAACCCTGGTATCGAGGTTT 820
Query 670 TTCCACCCAAAGAG 683
||||||||||||||
Sbjct 821 TTCCACCCAAAGAG 834
Score = 257 bits (139), Expect = 1e-67
Identities = 147/151 (97%), Gaps = 0/151 (0%)
Strand=Plus/Plus
Query 682 AGTTTGGTCAGCAAACATTTGAGAATCCGGAGATGCAGTTCGGGTCGCAGTCTACGAGGG 741
|||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1241 AGTTTGGTCAGCAAGCGTTTGAGAATCCGGAGATACAGTTCGGGTCGCAGTCTACGAGGG 1300
Query 742 AATACAGTAGAGGAGCATCACCAGAGTGGTTGCATATGCAGATAGGATCAGGTGGTTTCG 801
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1301 AATACAGTAGAGGAGCATCACCAGAGTGGTTGCACATGCAGATAGGATCAGGTGGTTTCG 1360
Query 802 AAAGAACGTCTTGATAAAGAAACAACACTTG 832
|||||||||||||||||||||||||||||||
Sbjct 1361 AAAGAACGTCTTGATAAAGAAACAACACTTG 1391
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40689659070
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5