BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925133
Length=1016
Score E
Sequences producing significant alignments: (Bits) Value
AT1G59600.1 | Symbols: ZCW7 | ZCW7 | chr1:21889695-21891962 REV... 1554 0.0
> AT1G59600.1 | Symbols: ZCW7 | ZCW7 | chr1:21889695-21891962 REVERSE
LENGTH=1259
Length=1259
Score = 1554 bits (841), Expect = 0.0
Identities = 946/997 (95%), Gaps = 5/997 (1%)
Strand=Plus/Plus
Query 1 TTTTGCTTCGACGGCGGAAAAATGCGATCGTTAGAAGAGTTATCTCCGGTCGAAACCCTA 60
|||||| |||||||| ||||||||||||||||||||||| |||||||| | ||||| |||
Sbjct 33 TTTTGCATCGACGGC-GAAAAATGCGATCGTTAGAAGAGCTATCTCCGATAGAAACTCTA 91
Query 61 GATATCGAAGAGAACGGTCTCTCTCTCGTCTCACGCGTCAAGCTCTGTCTCACAATCCAC 120
||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 92 GATATCGAAGAGAACGGTCTCGCTCTCGTCTCACGCGTCAAGCTCAATCTCACAATCCAC 151
Query 121 CCAATAGTCCCCTCCGTATCCAAATCCATCGACGAATGGCAACTCAAACGATCCTTAATA 180
||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 152 CCAGTAGTCCCATCCGTATCCAAATCCATCGACGAATGGCAACTCAAGCGATCCTTAATA 211
Query 181 GATTACCTCAAAAACTCCGTCGT-ACCGTCCGTCACAGTTGCGGAGGAAGACATCGTAGT 239
||||||||||||||||| ||||| ||| |||||||||||| |||||||||||||||||||
Sbjct 212 GATTACCTCAAAAACTCTGTCGTAACC-TCCGTCACAGTTCCGGAGGAAGACATCGTAGT 270
Query 240 TCGCCGTCACAAGGATTTAAAGAAACGGAAGCGTGAGGAGCCAGTTGCTCATGGATCGTT 299
||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 271 TCGTCGTCACAAGGACTTGAAGAAACGGAAGCGTGAGGAGCCAGTTGCTCATGGATCGTT 330
Query 300 GTTTATACGCGATTTAGGGTTTCTTGATGggaagaagaggaagaaagagaatgatggaga 359
|||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||
Sbjct 331 GTTTATACGCGATTTAGGGTTTCTCGATGGGAAGAAGAAGAAGAAGGAGAATGATGGAGA 390
Query 360 gagagatgtgaaggaattggagaagaagtttttggattggaggaagagTTTGGTGGAGAA 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 391 GAGAGATGTGAAGGAATTGGAGAAGAAGTTTTTGGATTGGAGGAAGAGTTTGGTGGAGAA 450
Query 420 GATGAATGGTATTGAGCTTAATTTGGAAGGAGTTAAGTATAAGCTTAGTGTTGTACTTCC 479
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 451 GATGAATGGTATTGAGCTTAATTTGGAAGGAGTTAAGTATAAGCTTAGTGTGGTACTTCC 510
Query 480 GATTTCAGATGATTTCGAGAGGTTGAAGAAGGATTGGGAGGAGTTTTATGCTTTTGGACA 539
|||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 511 GATTTCAGATGATTTCGAGAAGTTGAAGAAGGATTGGGAGGAGTTTTACGCTTTTGGACA 570
Query 540 TTCAAGGGAAGGAAGGAGAGAGGCTGATACGGTTATACTTAGAGGTGTTCCATCAAGATG 599
||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct 571 TTCAAGGGAAGGAAGGAGAGAGGCTGATACGATTATACTTAGAGGTGTGCCATCAAGATG 630
Query 600 GTTTGCTGAGCCAAGAGTTTCATCGAAGCCTTCAATGTTGGTTACGCATACAATCTTCTC 659
||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 631 GTTTGCTGAGCCACGAGTTTCATCGAAGCCTTCTATGTTGGTTACACATACAATCTTCTC 690
Query 660 TAGCTTTGGGAAAATAAGGAATCTTAATGTTGCTGAGGACGATGATCTAGGTAAAGACGC 719
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 691 TAGCTTTGGGAAAATTAGGAATCTTAATGTTGCTGAGGACGATGATCTAGGTAAGGACGC 750
Query 720 AGATGAGGACAGTGGAGACCTCGTATCAGGTCTCCATTGTAAGATTGTGGTTCAGTTCGA 779
||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 751 AGATGAGGATAGTGGAGACCTCATATCAGGTCTCCATTGTAAGATTGTGGTTCAGTTCGA 810
Query 780 GAAGTACAATGACTTT-GTGAATGCCATGAAGGCTTTCAGTGGTCGCTCAATGGAAAAGG 838
|||||||||||| ||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 811 GAAGTACAATGA-TTTCGTGAATGCCATGAAGGCTTTTTGTGGTCGCTCAATGGAAAAGG 869
Query 839 AAGGTACTCGGCTAAAGGCAGACTATGAACTAACATGGGACAAGATTGGGTTCTTCCGGA 898
|||| |||||||||||||||||||||||||||||||||||||||||||| |||||| | |
Sbjct 870 AAGGCACTCGGCTAAAGGCAGACTATGAACTAACATGGGACAAGATTGGATTCTTCAGAA 929
Query 899 ACTCGAGAAGGACATTGGATAACAGAGATGGAGGATACAGAAATGAGGCTTTCGGATACA 958
||||||||| | | ||||||||||||||||| ||||||||||| ||| |||| |||| ||
Sbjct 930 ACTCGAGAAAGCCGTTGGATAACAGAGATGGCGGATACAGAAACGAGTCTTTTGGATGCA 989
Query 959 ATCAGGATGATTTACGCCGGAAAAGATTCAGGGAGTA 995
||||||||||||||||||| |||||||||||||||||
Sbjct 990 ATCAGGATGATTTACGCCGAAAAAGATTCAGGGAGTA 1026
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49782039677
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5