BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925143
Length=209
Score E
Sequences producing significant alignments: (Bits) Value
AT4G38910.2 | Symbols: BPC5 | basic pentacysteine 5 | chr4:1814... 287 3e-77
> AT4G38910.2 | Symbols: BPC5 | basic pentacysteine 5 | chr4:18145351-18146873
REVERSE LENGTH=1068
Length=1068
Score = 287 bits (155), Expect = 3e-77
Identities = 192/210 (91%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 1 TCTCAGTATCCGCTCTCGCAGATGCCAAACAAGCGGCATTCTCGAG-TGTGCGGTAGGAA 59
||| ||||||||||| ||||||||||||||||||||||||| |||| || |||| |||||
Sbjct 753 TCTGAGTATCCGCTCCCGCAGATGCCAAACAAGCGGCATTCCCGAGTTG-GCGGCAGGAA 811
Query 60 GGTGAGCGGAAGTGTCTTCTCCAGGTTACTTAGTCGTTTAGCTGGCGAAGGGCACGGGCT 119
|||| |||||||||||||||||||||||||||||||||||||| |||||||| | |||
Sbjct 812 AATGAGTGGAAGTGTCTTCTCCAGGTTACTTAGTCGTTTAGCTGGTGAAGGGCATGAGCT 871
Query 120 TTCTTCTCCACTTGATCTCAAGGACTATTGGGCTAGGCACGGCACAAACCGCTACATCAC 179
||| ||||| ||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct 872 TTCCTCTCCGGTTGATCTCAAGAACTATTGGGCTAGGCACGGCACCAACCGCTACATCAC 931
Query 180 TATCAAGTAACCAAGATTTATGACCCAGTA 209
||||||||||||||||||||||| ||||||
Sbjct 932 TATCAAGTAACCAAGATTTATGAGCCAGTA 961
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9356051286
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5