BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925154
Length=2109
Score E
Sequences producing significant alignments: (Bits) Value
AT2G21790.1 | Symbols: R1, RNR1, CLS8, ATRNR1 | ribonucleotide ... 1384 0.0
> AT2G21790.1 | Symbols: R1, RNR1, CLS8, ATRNR1 | ribonucleotide
reductase 1 | chr2:9293270-9297842 FORWARD LENGTH=2972
Length=2972
Score = 1384 bits (749), Expect = 0.0
Identities = 1234/1462 (84%), Gaps = 57/1462 (4%)
Strand=Plus/Plus
Query 651 ATGTTGATCAAGGAGGAGGTAAGAAG-AATGGA-CCATTTGCTGTATACCTGGAGCCATG 708
||||||| ||||||||||| ||| || || ||| || |||||||| ||||||||||||||
Sbjct 1113 ATGTTGACCAAGGAGGAGGCAAG-AGAAAGGGAGCC-TTTGCTGTTTACCTGGAGCCATG 1170
Query 709 GCATGCTGACATCTTTGAGTTTCTAAAGAT-CCAGAAGAACCACGGAAAGGTACAGAACA 767
||||||||| ||| ||||||||| || | | | |||||||| ||||||| | ||||||
Sbjct 1171 GCATGCTGATGTCTATGAGTTTCTGGAGCTGCGA-AAGAACCATGGAAAGG-A-AGAACA 1227
Query 768 GTCAGGAG-GAGCACA-TGGCTATA-GCTCTCTGGATACCAGATCTTTTCATGGAGAGAG 824
|||| | || | | | | | || ||||||||| | |||||||||||||||||||| |
Sbjct 1228 --CAGG-GCTAG-AGATTTGTTTTATGCTCTCTGGCTTCCAGATCTTTTCATGGAGAGGG 1283
Query 825 T-CAAACATGATGGGAAGTGGTCATTGTTTTGTCCTAATGAAGCTCCAGGTTTGGCAGAT 883
| || | || ||||| |||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 1284 TCCAGA-ATAATGGGCAGTGGTCACTGTTTTGTCCTAACGAAGCTCCAGGTTTGGCAGAT 1342
Query 884 TGCTGGGGCA-CAGAATTTGAGAGACTGTACACAAAGTATGAAAGAGAGGGAAAGGCGAA 942
|||||||| | | |||||||||| ||||||||| ||||||||||||||||||||||| ||
Sbjct 1343 TGCTGGGG-AGCTGAATTTGAGACACTGTACACTAAGTATGAAAGAGAGGGAAAGGCCAA 1401
Query 943 GAAGGTTTTTCCGGCGCAGGAACCttt-ttttGATATCTTGACATCCCAGCTAGAAACAG 1001
|||||| ||| |||||| | | |||| | || || |||||||||||| |||||||||
Sbjct 1402 AAAGGTTGTTCAGGCGCA-GCAGCTTTGGTACGAAATATTGACATCCCAGGTAGAAACAG 1460
Query 1002 GAATGCCATACATGCTTTTTAAGGATTCATGCAACAGAAAAAGCAATCAGCAAAATCTTG 1061
||| |||||||||||||| ||||||||||||||| ||||||| |||||||||||||| |
Sbjct 1461 GAACACCATACATGCTTTTCAAGGATTCATGCAACCGAAAAAGTAATCAGCAAAATCTGG 1520
Query 1062 GTACCATAAAGTCCTCTAGTTTATGTACTGGAGTTATTGAGTACACTAGTCCAACGGAAA 1121
||||||||||||| || | ||||| |||| | | |||||||||||||||||||| ||||
Sbjct 1521 GTACCATAAAGTCGTCCAACTTATGCACTGAAATCATTGAGTACACTAGTCCAACAGAAA 1580
Query 1122 CCACTGTGTGCAATCTTGCATCAATTG-------C----TT-T----G-G-A---CGTCC 1160
| ||||||||||||||||||| |||| | || | | | | ||||
Sbjct 1581 CTGCTGTGTGCAATCTTGCATCTATTGCTTTACCCAGATTTGTAAGGGAGAAGGGTGTCC 1640
Query 1161 CATTGGACTCTCATCCATCTAAGCTTGCTGGCAGCCTGCG-GTCAAAGAGTCGTTACTTT 1219
|||| |||||||||||| ||||||| |||||||| ||| | ||||||| ||||||||||
Sbjct 1641 CATTAGACTCTCATCCACCTAAGCTCGCTGGCAGTCTG-GACTCAAAGAATCGTTACTTT 1699
Query 1220 GATTATGACAAGTTAGCCGAGGTAACTGCAATTGTTACTAATGATCTCGATAGGATAATA 1279
|||| ||| || ||||| ||||| ||||| | ||||||| | ||||| ||| |||||||
Sbjct 1700 GATTTTGAAAAATTAGCAGAGGTGACTGCTACTGTTACTGTTAATCTCAATAAGATAATA 1759
Query 1280 GACG-GAAACTACTATCCTGTGGAGACTGCAGAAACTTCAAACATGCGTCATAGACCTAT 1338
|| | | || ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1760 GATGTG-AATTACTATCCTGTGGAGACTGCAAAAACTTCAAACATGCGTCATAGACCTAT 1818
Query 1339 TGGTATTGGAGTACAAGGTCTTGCAGATGCATTTATCCTTCTTGGAATGCCATTTGACTC 1398
||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1819 TGGTATTGGTGTACAAGGCCTTGCAGATGCATTTATCCTCCTTGGAATGCCATTTGATTC 1878
Query 1399 TCCAGAGGCCCAAAAACTAAATAAGGATATATTTGAAACCATATACTACCATGCACTCAA 1458
||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1879 TCCAGAGGCCCAACAACTGAATAAGGATATATTCGAAACCATATACTACCATGCACTCAA 1938
Query 1459 AGCATCTTCAGAGCTTGCTGCAAGAAATGATGCATATGAGACATACAAAGGAAGTCCCAT 1518
||||||| ||||||||||||||||| || | ||||| || || ||||||||| |
Sbjct 1939 AGCATCTACAGAGCTTGCTGCAAGACTTGGCCCCTATGAAACCTATGCTGGAAGTCCCGT 1998
Query 1519 GAGCAAGGGGATTCTTCAACCTGACATGTGGAATGTGACTCCATCAAACCGCTGGGACTG 1578
||| ||||| || ||||||||||||||||||||||| | ||||||| |||||||||||||
Sbjct 1999 GAGTAAGGGAATCCTTCAACCTGACATGTGGAATGTAATTCCATCAGACCGCTGGGACTG 2058
Query 1579 GGATTTTCTTAGGGAAATGATATCAAAGAATGGAGTGAGGAACTCTCTTTTAGTATCACT 1638
|| | ||||||| || ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2059 GGCTGTTCTTAGAGATATGATATCAAAGAATGGAGTGAGGAACTCTCTTTTAGTAGCACC 2118
Query 1639 GATGCCAACTGCTTCAACCAGTCAGATTCTCGGGAACAACGAATCTTTCGAGCCATACAC 1698
||||||||||||||||||||||| || || |||||||| |||| ||| ||||| |||||
Sbjct 2119 AATGCCAACTGCTTCAACCAGTCAAATCCTTGGGAACAATGAATGTTTTGAGCCCTACAC 2178
Query 1699 ATCAAACATCTACAGCCACAGAGGATTGAGTGGGGAATCCATACTTGTGAATAAGCATCT 1758
||||||||||||||||| ||||| |||||||| |||| | || | || |||||||||||
Sbjct 2179 ATCAAACATCTACAGCCGCAGAGTCTTGAGTGGTGAATTCGTAGTGGTTAATAAGCATCT 2238
Query 1759 TCTTCATGATTTGACTGAAATGGGTCTTTGGACTCCAACACTGAAAGAGAAGATCA-TTG 1817
||| ||||| | ||||| ||||| |||||||||||||| |||||| | || || | ||
Sbjct 2239 TCTCCATGACCTAACTGATATGGGACTTTGGACTCCAACGCTGAAAAACAA-ATTAATTA 2297
Query 1818 ATGAGAACGGTTCGATACGT-AATGTCCCAGAGATACCTGATGACATGAAAGCTATTTAC 1876
||||||| ||||| ||| || ||||| | ||||||||||||||| |||| || ||||||
Sbjct 2298 ATGAGAATGGTTCTATA-GTTAATGTTGCTGAGATACCTGATGACTTGAAGGCGATTTAC 2356
Query 1877 AGAACTG-CATGGGAGATTAAACAAAGAACCGTGGTCGACATGGCTGTTGATCGTGGATG 1935
||||||| | ||||| || ||||| ||||| ||||| |||||||||| ||||||||||||
Sbjct 2357 AGAACTGTC-TGGGAAATCAAACAGAGAACAGTGGTGGACATGGCTGCTGATCGTGGATG 2415
Query 1936 CTACATAGATCAAAGCCAAACCTTAAACATAAACCTGGA-AGAACCTAGCTAC-CAAAAA 1993
|||||||||||||||||||| |||||||||| || |||| | |||| | || | |||||
Sbjct 2416 CTACATAGATCAAAGCCAAAGCTTAAACATACACATGGACA-AACCCAACTTCGCAAAA- 2473
Query 1994 CTCACTTCTTTACACTTTTATACTTGGACTAAGGGTTTGAAAACCGGGATGCACTACCTG 2053
|||||||| ||||||| |||||||||| |||||| |||||||||||||| ||||||||
Sbjct 2474 CTCACTTCGCTACACTTCTATACTTGGAAAAAGGGTCTGAAAACCGGGATGTACTACCTG 2533
Query 2054 CGATCACGTGCTACAACT-ATG 2074
||||| |||||| || || |||
Sbjct 2534 CGATCCCGTGCTGCAGCTGATG 2555
Score = 399 bits (216), Expect = 4e-110
Identities = 311/355 (88%), Gaps = 13/355 (4%)
Strand=Plus/Plus
Query 272 TATGACCGTGATTTTGATTATGATTTCTTTGGATTTAAAACGCTTGAGAGGTTGTACCTC 331
||||||||||||||||| ||||||| ||||||||||||||| |||||||| | |||||||
Sbjct 668 TATGACCGTGATTTTGAATATGATTACTTTGGATTTAAAACTCTTGAGAGATCGTACCTC 727
Query 332 TTGAAAGTCCATGGGAAAGTTGTTGAAAGGCCTCAACACATGCTCATGAGAGTTGTTGTT 391
||||||||||| |||| |||||||||||||||||||||||||| ||||| |||| ||||
Sbjct 728 TTGAAAGTCCAAGGGACTGTTGTTGAAAGGCCTCAACACATGCTGATGAGGGTTGCTGTT 787
Query 392 GGCATTCACATGGAAGATATTGATTCTGCAATCAAAACTTACCATTTGATGTCTCAGAGA 451
|| || |||| ||| ||||||||||| | ||| |||| |||||||||||||||||||||
Sbjct 788 GGGATCCACAAGGATGATATTGATTCCGTGATCCAAACCTACCATTTGATGTCTCAGAGA 847
Query 452 TTGTTCACTCATGCATCTCCTACTCTCTTCAACGCAGGAACTCCAAGGCCTCAATTAAGT 511
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 848 TGGTTCACTCATGCATCTCCTACTCTCTTCAACGCAGGAACTCCAAGGCCTCAATTAAGT 907
Query 512 AGCAGCTTTCTTA-TCTGCATGAGAGATGATAGCATCGAGAGCA---------CACTCCA 561
||| ||||||| | ||||||||| |||||||||||| ||| ||| ||||| |
Sbjct 908 AGCTGCTTTCT-AGTCTGCATGAAAGATGATAGCATTGAGGGCATATATGAAACACTC-A 965
Query 562 AA-AGTGTGATGTTATAAGAAAATCTGCAGGCAGTATTAGTGTTTCAGTTCATAA 615
|| |||||| ||||||||| |||||||| || ||||| ||||||||||||||||
Sbjct 966 AAGAGTGTGCTGTTATAAGCAAATCTGCTGGGGGTATTGGTGTTTCAGTTCATAA 1020
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 104567735235
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5