BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg925154 Length=2109 Score E Sequences producing significant alignments: (Bits) Value AT2G21790.1 | Symbols: R1, RNR1, CLS8, ATRNR1 | ribonucleotide ... 1384 0.0 > AT2G21790.1 | Symbols: R1, RNR1, CLS8, ATRNR1 | ribonucleotide reductase 1 | chr2:9293270-9297842 FORWARD LENGTH=2972 Length=2972 Score = 1384 bits (749), Expect = 0.0 Identities = 1234/1462 (84%), Gaps = 57/1462 (4%) Strand=Plus/Plus Query 651 ATGTTGATCAAGGAGGAGGTAAGAAG-AATGGA-CCATTTGCTGTATACCTGGAGCCATG 708 ||||||| ||||||||||| ||| || || ||| || |||||||| |||||||||||||| Sbjct 1113 ATGTTGACCAAGGAGGAGGCAAG-AGAAAGGGAGCC-TTTGCTGTTTACCTGGAGCCATG 1170 Query 709 GCATGCTGACATCTTTGAGTTTCTAAAGAT-CCAGAAGAACCACGGAAAGGTACAGAACA 767 ||||||||| ||| ||||||||| || | | | |||||||| ||||||| | |||||| Sbjct 1171 GCATGCTGATGTCTATGAGTTTCTGGAGCTGCGA-AAGAACCATGGAAAGG-A-AGAACA 1227 Query 768 GTCAGGAG-GAGCACA-TGGCTATA-GCTCTCTGGATACCAGATCTTTTCATGGAGAGAG 824 |||| | || | | | | | || ||||||||| | |||||||||||||||||||| | Sbjct 1228 --CAGG-GCTAG-AGATTTGTTTTATGCTCTCTGGCTTCCAGATCTTTTCATGGAGAGGG 1283 Query 825 T-CAAACATGATGGGAAGTGGTCATTGTTTTGTCCTAATGAAGCTCCAGGTTTGGCAGAT 883 | || | || ||||| |||||||| ||||||||||||| ||||||||||||||||||||| Sbjct 1284 TCCAGA-ATAATGGGCAGTGGTCACTGTTTTGTCCTAACGAAGCTCCAGGTTTGGCAGAT 1342 Query 884 TGCTGGGGCA-CAGAATTTGAGAGACTGTACACAAAGTATGAAAGAGAGGGAAAGGCGAA 942 |||||||| | | |||||||||| ||||||||| ||||||||||||||||||||||| || Sbjct 1343 TGCTGGGG-AGCTGAATTTGAGACACTGTACACTAAGTATGAAAGAGAGGGAAAGGCCAA 1401 Query 943 GAAGGTTTTTCCGGCGCAGGAACCttt-ttttGATATCTTGACATCCCAGCTAGAAACAG 1001 |||||| ||| |||||| | | |||| | || || |||||||||||| ||||||||| Sbjct 1402 AAAGGTTGTTCAGGCGCA-GCAGCTTTGGTACGAAATATTGACATCCCAGGTAGAAACAG 1460 Query 1002 GAATGCCATACATGCTTTTTAAGGATTCATGCAACAGAAAAAGCAATCAGCAAAATCTTG 1061 ||| |||||||||||||| ||||||||||||||| ||||||| |||||||||||||| | Sbjct 1461 GAACACCATACATGCTTTTCAAGGATTCATGCAACCGAAAAAGTAATCAGCAAAATCTGG 1520 Query 1062 GTACCATAAAGTCCTCTAGTTTATGTACTGGAGTTATTGAGTACACTAGTCCAACGGAAA 1121 ||||||||||||| || | ||||| |||| | | |||||||||||||||||||| |||| Sbjct 1521 GTACCATAAAGTCGTCCAACTTATGCACTGAAATCATTGAGTACACTAGTCCAACAGAAA 1580 Query 1122 CCACTGTGTGCAATCTTGCATCAATTG-------C----TT-T----G-G-A---CGTCC 1160 | ||||||||||||||||||| |||| | || | | | | |||| Sbjct 1581 CTGCTGTGTGCAATCTTGCATCTATTGCTTTACCCAGATTTGTAAGGGAGAAGGGTGTCC 1640 Query 1161 CATTGGACTCTCATCCATCTAAGCTTGCTGGCAGCCTGCG-GTCAAAGAGTCGTTACTTT 1219 |||| |||||||||||| ||||||| |||||||| ||| | ||||||| |||||||||| Sbjct 1641 CATTAGACTCTCATCCACCTAAGCTCGCTGGCAGTCTG-GACTCAAAGAATCGTTACTTT 1699 Query 1220 GATTATGACAAGTTAGCCGAGGTAACTGCAATTGTTACTAATGATCTCGATAGGATAATA 1279 |||| ||| || ||||| ||||| ||||| | ||||||| | ||||| ||| ||||||| Sbjct 1700 GATTTTGAAAAATTAGCAGAGGTGACTGCTACTGTTACTGTTAATCTCAATAAGATAATA 1759 Query 1280 GACG-GAAACTACTATCCTGTGGAGACTGCAGAAACTTCAAACATGCGTCATAGACCTAT 1338 || | | || ||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1760 GATGTG-AATTACTATCCTGTGGAGACTGCAAAAACTTCAAACATGCGTCATAGACCTAT 1818 Query 1339 TGGTATTGGAGTACAAGGTCTTGCAGATGCATTTATCCTTCTTGGAATGCCATTTGACTC 1398 ||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||| || Sbjct 1819 TGGTATTGGTGTACAAGGCCTTGCAGATGCATTTATCCTCCTTGGAATGCCATTTGATTC 1878 Query 1399 TCCAGAGGCCCAAAAACTAAATAAGGATATATTTGAAACCATATACTACCATGCACTCAA 1458 ||||||||||||| |||| |||||||||||||| |||||||||||||||||||||||||| Sbjct 1879 TCCAGAGGCCCAACAACTGAATAAGGATATATTCGAAACCATATACTACCATGCACTCAA 1938 Query 1459 AGCATCTTCAGAGCTTGCTGCAAGAAATGATGCATATGAGACATACAAAGGAAGTCCCAT 1518 ||||||| ||||||||||||||||| || | ||||| || || ||||||||| | Sbjct 1939 AGCATCTACAGAGCTTGCTGCAAGACTTGGCCCCTATGAAACCTATGCTGGAAGTCCCGT 1998 Query 1519 GAGCAAGGGGATTCTTCAACCTGACATGTGGAATGTGACTCCATCAAACCGCTGGGACTG 1578 ||| ||||| || ||||||||||||||||||||||| | ||||||| ||||||||||||| Sbjct 1999 GAGTAAGGGAATCCTTCAACCTGACATGTGGAATGTAATTCCATCAGACCGCTGGGACTG 2058 Query 1579 GGATTTTCTTAGGGAAATGATATCAAAGAATGGAGTGAGGAACTCTCTTTTAGTATCACT 1638 || | ||||||| || ||||||||||||||||||||||||||||||||||||||| ||| Sbjct 2059 GGCTGTTCTTAGAGATATGATATCAAAGAATGGAGTGAGGAACTCTCTTTTAGTAGCACC 2118 Query 1639 GATGCCAACTGCTTCAACCAGTCAGATTCTCGGGAACAACGAATCTTTCGAGCCATACAC 1698 ||||||||||||||||||||||| || || |||||||| |||| ||| ||||| ||||| Sbjct 2119 AATGCCAACTGCTTCAACCAGTCAAATCCTTGGGAACAATGAATGTTTTGAGCCCTACAC 2178 Query 1699 ATCAAACATCTACAGCCACAGAGGATTGAGTGGGGAATCCATACTTGTGAATAAGCATCT 1758 ||||||||||||||||| ||||| |||||||| |||| | || | || ||||||||||| Sbjct 2179 ATCAAACATCTACAGCCGCAGAGTCTTGAGTGGTGAATTCGTAGTGGTTAATAAGCATCT 2238 Query 1759 TCTTCATGATTTGACTGAAATGGGTCTTTGGACTCCAACACTGAAAGAGAAGATCA-TTG 1817 ||| ||||| | ||||| ||||| |||||||||||||| |||||| | || || | || Sbjct 2239 TCTCCATGACCTAACTGATATGGGACTTTGGACTCCAACGCTGAAAAACAA-ATTAATTA 2297 Query 1818 ATGAGAACGGTTCGATACGT-AATGTCCCAGAGATACCTGATGACATGAAAGCTATTTAC 1876 ||||||| ||||| ||| || ||||| | ||||||||||||||| |||| || |||||| Sbjct 2298 ATGAGAATGGTTCTATA-GTTAATGTTGCTGAGATACCTGATGACTTGAAGGCGATTTAC 2356 Query 1877 AGAACTG-CATGGGAGATTAAACAAAGAACCGTGGTCGACATGGCTGTTGATCGTGGATG 1935 ||||||| | ||||| || ||||| ||||| ||||| |||||||||| |||||||||||| Sbjct 2357 AGAACTGTC-TGGGAAATCAAACAGAGAACAGTGGTGGACATGGCTGCTGATCGTGGATG 2415 Query 1936 CTACATAGATCAAAGCCAAACCTTAAACATAAACCTGGA-AGAACCTAGCTAC-CAAAAA 1993 |||||||||||||||||||| |||||||||| || |||| | |||| | || | ||||| Sbjct 2416 CTACATAGATCAAAGCCAAAGCTTAAACATACACATGGACA-AACCCAACTTCGCAAAA- 2473 Query 1994 CTCACTTCTTTACACTTTTATACTTGGACTAAGGGTTTGAAAACCGGGATGCACTACCTG 2053 |||||||| ||||||| |||||||||| |||||| |||||||||||||| |||||||| Sbjct 2474 CTCACTTCGCTACACTTCTATACTTGGAAAAAGGGTCTGAAAACCGGGATGTACTACCTG 2533 Query 2054 CGATCACGTGCTACAACT-ATG 2074 ||||| |||||| || || ||| Sbjct 2534 CGATCCCGTGCTGCAGCTGATG 2555 Score = 399 bits (216), Expect = 4e-110 Identities = 311/355 (88%), Gaps = 13/355 (4%) Strand=Plus/Plus Query 272 TATGACCGTGATTTTGATTATGATTTCTTTGGATTTAAAACGCTTGAGAGGTTGTACCTC 331 ||||||||||||||||| ||||||| ||||||||||||||| |||||||| | ||||||| Sbjct 668 TATGACCGTGATTTTGAATATGATTACTTTGGATTTAAAACTCTTGAGAGATCGTACCTC 727 Query 332 TTGAAAGTCCATGGGAAAGTTGTTGAAAGGCCTCAACACATGCTCATGAGAGTTGTTGTT 391 ||||||||||| |||| |||||||||||||||||||||||||| ||||| |||| |||| Sbjct 728 TTGAAAGTCCAAGGGACTGTTGTTGAAAGGCCTCAACACATGCTGATGAGGGTTGCTGTT 787 Query 392 GGCATTCACATGGAAGATATTGATTCTGCAATCAAAACTTACCATTTGATGTCTCAGAGA 451 || || |||| ||| ||||||||||| | ||| |||| ||||||||||||||||||||| Sbjct 788 GGGATCCACAAGGATGATATTGATTCCGTGATCCAAACCTACCATTTGATGTCTCAGAGA 847 Query 452 TTGTTCACTCATGCATCTCCTACTCTCTTCAACGCAGGAACTCCAAGGCCTCAATTAAGT 511 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 848 TGGTTCACTCATGCATCTCCTACTCTCTTCAACGCAGGAACTCCAAGGCCTCAATTAAGT 907 Query 512 AGCAGCTTTCTTA-TCTGCATGAGAGATGATAGCATCGAGAGCA---------CACTCCA 561 ||| ||||||| | ||||||||| |||||||||||| ||| ||| ||||| | Sbjct 908 AGCTGCTTTCT-AGTCTGCATGAAAGATGATAGCATTGAGGGCATATATGAAACACTC-A 965 Query 562 AA-AGTGTGATGTTATAAGAAAATCTGCAGGCAGTATTAGTGTTTCAGTTCATAA 615 || |||||| ||||||||| |||||||| || ||||| |||||||||||||||| Sbjct 966 AAGAGTGTGCTGTTATAAGCAAATCTGCTGGGGGTATTGGTGTTTCAGTTCATAA 1020 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 104567735235 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5