BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925158
Length=1136
Score E
Sequences producing significant alignments: (Bits) Value
AT5G28180.1 | Symbols: | Galactose oxidase/kelch repeat superf... 372 5e-102
AT4G19330.1 | Symbols: | Galactose oxidase/kelch repeat superf... 93.5 4e-18
AT4G19250.1 | Symbols: | Galactose oxidase/kelch repeat superf... 93.5 4e-18
AT4G39060.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 84.2 2e-15
> AT5G28180.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr5:10162783-10163943 FORWARD LENGTH=1059
Length=1059
Score = 372 bits (201), Expect = 5e-102
Identities = 579/755 (77%), Gaps = 51/755 (7%)
Strand=Plus/Plus
Query 60 GTTTTTGTCACTTCCTGATGATATCATCTTGACCTGTTTAGCCCGCATATCGAGATCATA 119
||||||||| || |||||||| ||| |||||| |||||||||||||||||||||||| ||
Sbjct 108 GTTTTTGTCGCTCCCTGATGAAATCGTCTTGAACTGTTTAGCCCGCATATCGAGATCGTA 167
Query 120 CTACCCGAAACTCGT-CCTAGTCTGCAAGAAATTTCGTTCTCTCATCGTCTCAAAAGAGC 178
||| ||||||||| | |||||||||||||| || || ||||| || | || || ||||
Sbjct 168 CTATCCGAAACTC-TCCCTAGTCTGCAAGACCTTCCGCACTCTCCTCATATCTAACGAGC 226
Query 179 TCATCGAT-GCACGAATTCATCTTGACACAC-ATGAAACCGTATTTCAAGTCCATTTACA 236
||| || | || ||| | || ||| | || | | |||| | ||||| ||| ||| |
Sbjct 227 TCACCG-TGGCGCGAGTGCAACTTAAAAC-CTACGAAAGTTTTTTTCATGTCTGCTTAAA 284
Query 237 GCTTACC-AAGAATCATTTTCCCTC-TTGGTACACCCTCTGGATTAAACCTGGTCAAATC 294
| || || | || | | ||| || | || |||||||||||| |||||||||||||||
Sbjct 285 G-TTTCCTGATAAACCTAATCCATCAAT-GTTCACCCTCTGGATAAAACCTGGTCAAATC 342
Query 295 CTAACCAACCAACTCGAAGAGAAGAA-GACGACGTCAAACA-AAAATATTCGGTTGGTAA 352
||||||||||||| |||||||| || || ||| ||| | || ||||||||||
Sbjct 343 TTAACCAACCAACT---TGAGAAGAACGA-GAGGTC-TACAGGAGCTACTCGGTTGGTAC 397
Query 353 AAATACCTTCTTGTTATT-CT-TA-TGTACCATC-TCGCATCCGTT-GGCCTGGTTCAGA 407
|||||||||||| |||| | || ||||||| | | | | || | |||||| ||
Sbjct 398 AAATACCTTCTTCATATTGTTCTATTGTACCA-CATTACCTAATTTCTG-TTGGTTCCGA 455
Query 408 AATGTATGGAATCAGCCTATC-CAGT-ACTCCGTCCTCCATCATGGAGT-TCCAAAACAA 464
| | || ||| |||||| | | || | | ||||||||||| ||| | | ||| |||||
Sbjct 456 AGTATACGGACTCAGCC-AACACAATGA-TCCGTCCTCCAACAT-GTTTGTCCGTAACAA 512
Query 465 AGA-GACTGGGTTATGGTGTAAAGCCCCCGACATG-CGTGTAGCTCGAGAGAAAGCTATT 522
|| || | ||| |||||||| ||||| ||||| | ||||||||||| |||||| | |
Sbjct 513 GGAGGA-TTTGTTTTGGTGTAATGCCCCAAACATGAC-TGTAGCTCGAGCGAAAGCCA-T 569
Query 523 GCAGG--CGTCCT-TGATGGCAAAATATACGTAATGGGCGG-TGCCGGGGCTGACGAATC 578
| || || ||| |||| ||| |||| || ||||| || || | ||| ||| |||||
Sbjct 570 -CGGGCACG-CCTACAATGGGAAACTATATGTCATGGGAGGTTG-CAGGGATGATGAATC 626
Query 579 CGTCAACTGGGGTGAGGTTTTCGACCCAAAGACTCAAACTTGGGAATCTTTACATGACCC 638
||| || |||||||||||||| |||||||||||||||||||||||| |||||| ||||||
Sbjct 627 CGTGAATTGGGGTGAGGTTTTTGACCCAAAGACTCAAACTTGGGAAGCTTTACCTGACCC 686
Query 639 TGGGGCTGAGCACCGGTTTTCTTCAATTAGAAAAATAGGTATGATAGAAGGAGAAA--TT 696
||| |||||| ||| |||||||||||||||||||||| | || | || || ||| ||
Sbjct 687 TGGCTCTGAGCTCCGTTTTTCTTCAATTAGAAAAATAGATGTGTTCCAA-GA-AAAGCTT 744
Query 697 TACGTTCTAAGCAATGAGGAG-TGGGATTCTGTTTATGATCCAAAAGAAGGTAAATGGGA 755
|||||| ||||| ||| || | || |||||||||||||||||||||||||||||| |
Sbjct 745 TACGTTAGCAGCAACGAGAAGAT-AGACTCTGTTTATGATCCAAAAGAAGGTAAATGGAA 803
Query 756 TGTTACAAGAAGAA-CATTTGTACACTGTAT-AAT 788
|||| || ||| || || ||| || ||||| |||
Sbjct 804 TGTTGCA-GAAAAATCACCTGTGCAATGTATGAAT 837
> AT4G19330.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr4:10554982-10558675 FORWARD LENGTH=1614
Length=1614
Score = 93.5 bits (50), Expect = 4e-18
Identities = 112/141 (79%), Gaps = 8/141 (6%)
Strand=Plus/Plus
Query 527 GCGTCCTTGATGGCAAAA-TATACGTAATGGGCGG-TGCCGGGGCTGACGAATC--CGTC 582
||||||||||||| |||| |||| |||||||| || || | || || ||||| | ||
Sbjct 998 GCGTCCTTGATGG-AAAACTATATGTAATGGGAGGATG-TGAAGCGGATGAATCTAC-TC 1054
Query 583 AACTGGGGTGAGGTTTTCGACCCAAAGACTCAAACTTGGGAATCTTTACATGACCCTGGG 642
| |||| ||| |||||||||||||||||||||||||||||| | || | || |||||
Sbjct 1055 -ATTGGGCTGAAGTTTTCGACCCAAAGACTCAAACTTGGGAAGCATTGCCGGATCCTGGA 1113
Query 643 GCTGAGCACCGGTTTTCTTCA 663
| ||||| ||||| ||||||
Sbjct 1114 GTTGAGCTCCGGTACTCTTCA 1134
> AT4G19250.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr4:10531504-10532190 FORWARD LENGTH=687
Length=687
Score = 93.5 bits (50), Expect = 4e-18
Identities = 112/141 (79%), Gaps = 8/141 (6%)
Strand=Plus/Plus
Query 527 GCGTCCTTGATGGCAAAA-TATACGTAATGGGCGG-TGCCGGGGCTGACGAATC--CGTC 582
||||||||||||| |||| |||| |||||||| || || | || || ||||| | ||
Sbjct 98 GCGTCCTTGATGG-AAAACTATATGTAATGGGAGGATG-TGAAGCGGATGAATCTAC-TC 154
Query 583 AACTGGGGTGAGGTTTTCGACCCAAAGACTCAAACTTGGGAATCTTTACATGACCCTGGG 642
| |||| ||| |||||||||||||||||||||||||||||| | || | || |||||
Sbjct 155 -ATTGGGCTGAAGTTTTCGACCCAAAGACTCAAACTTGGGAAGCATTGCCGGATCCTGGA 213
Query 643 GCTGAGCACCGGTTTTCTTCA 663
| ||||| ||||| ||||||
Sbjct 214 GTTGAGCTCCGGTACTCTTCA 234
> AT4G39060.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: Galactose oxidase/kelch repeat superfamily protein
(TAIR:AT4G19250.1); Has 375 Blast hits to 365 proteins in 7
species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants
- 367; Viruses - 0; Other Eukaryotes - 6 (source: NCBI
BLink). | chr4:18202607-18204634 FORWARD LENGTH=1107
Length=1107
Score = 84.2 bits (45), Expect = 2e-15
Identities = 74/88 (84%), Gaps = 2/88 (2%)
Strand=Plus/Plus
Query 586 TGGGGTGAGGTTTTCGACCCAAAGACTCAAACTTGGGAATCTTTACATGACCCTGGGGC- 644
|||| |||||||||||||||||||||||||||||||||| |||||| |||||||| |
Sbjct 447 TGGGCTGAGGTTTTCGACCCAAAGACTCAAACTTGGGAACCTTTACCGGACCCTGGCCCC 506
Query 645 TGAGCACCGGTTTTCTTCAATTAGAAAA 672
|||| |||| | |||| || || ||||
Sbjct 507 TGAGGTCCGGCTCTCTTTAAATA-AAAA 533
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55722604950
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5