BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925161
Length=1120
Score E
Sequences producing significant alignments: (Bits) Value
AT1G58470.1 | Symbols: ATRBP1, RBP1 | RNA-binding protein 1 | c... 1517 0.0
> AT1G58470.1 | Symbols: ATRBP1, RBP1 | RNA-binding protein 1 |
chr1:21727024-21728760 FORWARD LENGTH=1387
Length=1387
Score = 1517 bits (821), Expect = 0.0
Identities = 1033/1133 (91%), Gaps = 23/1133 (2%)
Strand=Plus/Plus
Query 1 AAATTAGGGTTTTTGTGGATATGGATTATGATCGGTTCAAGTTATTTGTTGGTGGTATTG 60
|||||||||| |||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 64 AAATTAGGGTATTTGAGGATATGGATTATGATCGGTACAAGTTATTTGTTGGTGGTATTG 123
Query 61 GGAAAGAGACTAGTGAAGAAGATTTGAAGCAGTATTTTAGCAGATATGGA-CTTGTGTTG 119
||||||||| |||||||||| | |||||||||||||||||||||||||| | |||||||
Sbjct 124 CGAAAGAGACAAGTGAAGAAGCTCTGAAGCAGTATTTTAGCAGATATGGAGC-TGTGTTG 182
Query 120 GGAGCTGTTGTAGCTAAAGACAAAGTCACTGGTATATCC-AGAGGGTTTGGGTTTGTTCG 178
| |||||||||||||||||| ||||||||||| | | || ||||| ||||||||||||||
Sbjct 183 GAAGCTGTTGTAGCTAAAGAGAAAGTCACTGG-AAAACCTAGAGGTTTTGGGTTTGTTCG 241
Query 179 CTTTGCTAATGATTATGATGTTGTTAAAGCTCTTA-ATGACACTCACTTCATTCTCGGTA 237
|||||||||||||| |||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 242 CTTTGCTAATGATTGTGATGTTGTTAAAGCTCTTAGA-GACACTCACTTCATTCTCGGTA 300
Query 238 AACCCGTTGATGTGAGGAAGGCTTTTCGGAAACATGAATTGTACCAACAACCGTTTAGCA 297
|||||||||||||||| ||||| || ||||||||||| | |||||||| ||||||||||
Sbjct 301 AACCCGTTGATGTGAGAAAGGCGATTAGGAAACATGAACTATACCAACAGCCGTTTAGCA 360
Query 298 TGCAGGTATTCGAGGGAAAAGTGCAACAGACCAACGGTGGTTTGCGTGAGATGTCGAGTA 357
||||| | || ||| ||||||||||||||| || |||||||||||||||||||||||||
Sbjct 361 TGCAGTTTTTGGAGAGAAAAGTGCAACAGATGAATGGTGGTTTGCGTGAGATGTCGAGTA 420
Query 358 ATGGTAAT-ATTCA-TAGGACTAAGAAGATATTTGTTGGGGGTTTGTCGTCTAACACGAC 415
||||| | | || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 ATGGT-GTGA-CCAGTAGGACTAAGAAGATATTTGTTGGGGGTTTGTCGTCTAACACGAC 478
Query 416 TCAGGAAGAGTTTAAGAGTTACTTTGAGAGGTTTGGTCGGACGATTGATGTAGTTGTGAT 475
| ||||||||||||||||||||||||||||||||||| |||| | |||||||||||||||
Sbjct 479 TGAGGAAGAGTTTAAGAGTTACTTTGAGAGGTTTGGTAGGACTACTGATGTAGTTGTGAT 538
Query 476 GCATGACGGTGTGACAAACAAGCCAAGGGGTTTTGGGTTTGTTACTTATGATTCGGAGGA 535
||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 539 GCATGACGGTGTGACTAACAGGCCAAGGGGTTTTGGGTTTGTTACTTATGATTCGGAGGA 598
Query 536 CTCTGTTGAGGTTGTTATGCGGAGTAATTTCCATGAGTTGAGTGATAAGCGCGTTGAAGT 595
|||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||||
Sbjct 599 CTCTGTTGAGGTTGTTATGCAGAGTAATTTCCATGAGTTGAGTGATAAACGCGTGGAAGT 658
Query 596 GAAACGGGCAATACCTAAAGAAGGAATCCAGAGCAATAACGGTAATGTTAACGTTAACGT 655
||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |
Sbjct 659 GAAACGGGCAATACCTAAAGAAGGAATCCAGAGCAATAACGGTAATGCT---GTTAATAT 715
Query 656 GCCTCCTACATACAGCAGCTTTCAAGCAACACCGTATGTTCCTGAGCAAAACAGATATGG 715
|||||| | ||||||||||||||||||||||| ||||| |||||||||||| |||||||
Sbjct 716 TCCTCCTTCCTACAGCAGCTTTCAAGCAACACCTTATGTCCCTGAGCAAAACGGATATGG 775
Query 716 GATGGTTCTACAGTATCCTCCTG-TGT-TT-GGTTATCATCACAGTGTCCAAGCCGTTCA 772
||||||| |||||| ||||||| ||| || ||||||||||||| |||||||||||||||
Sbjct 776 GATGGTTTTACAGTTTCCTCCTCCTGTCTTTGGTTATCATCACAATGTCCAAGCCGTTCA 835
Query 773 ATATCCTTATGGTTACCAATTCACAGCTCAAGTGCCTAACGTTTCATGGAACAATCCGAT 832
||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 836 ATATCCTTATGGTTACCAATTCACAGCACAAGTGGCTAACGTTTCATGGAACAATCCGAT 895
Query 833 TATGCAACCCACCGGTTTTTACTGTGCTGCTGctcctcctcctcctcctcctAGCAACAC 892
|||||||||||||||||||||||||||| || ||| |||| |||||||||| | |||||
Sbjct 896 TATGCAACCCACCGGTTTTTACTGTGCTCCTCCTCATCCTACTCCTCCTCCCACCAACAA 955
Query 893 TCTTGGTTAT-TCCCCTTACATGAACGGGTTTGATCTTTCGGGTAC-AAGCATTCCCAGG 950
|||||||||| ||| | |||||||||||||||||||||||||||| || |||| || ||
Sbjct 956 TCTTGGTTATATCCAAT-ACATGAACGGGTTTGATCTTTCGGGTACGAA-CATTTCCGGG 1013
Query 951 TACAATCCTGTACCATGGCCTGCAACGGGGGATGCAGCTGGTGTGCTAATACA---GTTC 1007
||||||||| || ||||||||| |||||||||||||||||||| ||||||||| |||
Sbjct 1014 TACAATCCTCTAGCATGGCCTGTAACGGGGGATGCAGCTGGTGCGCTAATACATCAGTTT 1073
Query 1008 GGAGATTTGAAGTTTGATGTCCATAGTCAAGCACATCAGAGAATGAGTGGAGGTAACATG 1067
| |||||||||| |||||||||| |||||||| ||||||||||||| |||||||||||||
Sbjct 1074 GTAGATTTGAAGCTTGATGTCCACAGTCAAGCCCATCAGAGAATGAATGGAGGTAACATG 1133
Query 1068 GGAATACCATTGCAGAATGGTACATATAGATAATAGTTGCAGAATGATAAATG 1120
|||||||||||||||||||||||||||| || | |||||||||||||||||||
Sbjct 1134 GGAATACCATTGCAGAATGGTACATATATATGACAGTTGCAGAATGATAAATG 1186
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54919396230
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5