BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925173
Length=1639
Score E
Sequences producing significant alignments: (Bits) Value
AT1G58340.1 | Symbols: ZF14 | MATE efflux family protein | chr1... 2566 0.0
AT5G49138.1 | Symbols: | other RNA | chr5:19915868-19917277 RE... 58.4 2e-07
AT5G49130.1 | Symbols: | MATE efflux family protein | chr5:199... 58.4 2e-07
> AT1G58340.1 | Symbols: ZF14 | MATE efflux family protein | chr1:21653008-21655439
FORWARD LENGTH=2075
Length=2075
Score = 2566 bits (1389), Expect = 0.0
Identities = 1555/1638 (95%), Gaps = 0/1638 (0%)
Strand=Plus/Plus
Query 1 GTTTACTCGTCTCGAGAATCATGTGTAACTCAAAACCATCTTCTGCTTCCTCTTCCTTAT 60
|||||||| ||| |||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 135 GTTTACTCCTCTTAAGAATCATGTGTAATTCAAAACCATCTTCTGCTTCATCTTCCTTAT 194
Query 61 TATCTTGTAAAGACAAAACCCATTTCTCAAAACTCGAAACCTGTGATACAGATAATCCTC 120
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 195 TATCTTGTAAAGACAAAACCCATATCTCAAAACTCGAAACCTGTGATACAGATAATCCTC 254
Query 121 ATTATTCCGACTTCACGGATAATGATTCTCTAGACCTTAAAAGATGGCCAACTTTTCTGG 180
||||||| || |||| ||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 255 ATTATTCTGAATTCAGGGATACTGATTCTCTAGACCTTAAAAGATGGCCAAGTTTTCTGG 314
Query 181 AGGGCTTAGAGGAAGTGAAGGCAATAGGAAGAATCTCTGGGCCGACGGCGATGACCGGGC 240
|||||||||||||||||||||| || |||| |||||||||||||||||||||||||||||
Sbjct 315 AGGGCTTAGAGGAAGTGAAGGCGATCGGAAAAATCTCTGGGCCGACGGCGATGACCGGGC 374
Query 241 TTCTTATGTACTCAAGAGCAATGATATCGATGCTGTTCCTAGGCTACCTCGGCGAGCTTG 300
||||||||||||||||||| |||||||||||||||||| ||||||||||||| |||||||
Sbjct 375 TTCTTATGTACTCAAGAGCGATGATATCGATGCTGTTCTTAGGCTACCTCGGTGAGCTTG 434
Query 301 AGTTAGCCGGAGGATCTCTCTCCATAGGCTTTGCCAATATCACCGGCTACTCCGTCATCT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 435 AGTTAGCCGGAGGATCTCTCTCCATAGGCTTTGCCAATATCACCGGCTACTCCGTCATCT 494
Query 361 CCGGTTTGTCCATGGGGATGGAACCAATCTGCGGCCAAGCCTACGGAGCTAAACAAATGA 420
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 495 CCGGTTTGTCCATGGGGATGGAACCAATCTGTGGCCAAGCATACGGAGCTAAACAAATGA 554
Query 421 AGCTTTTAGGACTAACCCTTCAAAGAACCGTCCTCCTACTCCTCTCCTGCTCGGTCCCTA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 555 AGCTTTTAGGACTAACCCTTCAAAGAACCGTCCTCCTACTCCTCTCCTGCTCGGTCCCTA 614
Query 481 TATCTTTCTCTTGGCTCAACATGCGTCGAATCCTCTTATGGTGTGGCCAAGACGAAGAGA 540
| || ||||| |||||||||||||| ||||||||||||||||| |||||||| |||||||
Sbjct 615 TCTCCTTCTCGTGGCTCAACATGCGCCGAATCCTCTTATGGTGCGGCCAAGATGAAGAGA 674
Query 541 TCTCCACCGTTGCTCAAAAGTTCCTTCTCTTCGCTATCCCTGACCTCTTCCTCCTCTCTC 600
||||| | ||||||||| |||||||||| ||||| ||||||||||||||||| |||||||
Sbjct 675 TCTCCTCTGTTGCTCAACAGTTCCTTCTATTCGCCATCCCTGACCTCTTCCTTCTCTCTC 734
Query 601 TACTTCATCCTCTTCGCATTTACCTTCGAACACAAAACATTACATTACCCGTGACTTACT 660
| ||||| |||||||| |||||||| |||||||||||||||||||| |||||||||||||
Sbjct 735 TGCTTCACCCTCTTCGAATTTACCTCCGAACACAAAACATTACATTGCCCGTGACTTACT 794
Query 661 CTACGGCCGTGTCCGTTCTCCTCCACGTTCCTTTGAACTACCTCCTAGTGGTGAAACTGG 720
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 795 CCACGGCCGTGTCCGTTCTCCTCCACGTTCCTTTGAACTACCTCCTAGTGGTGAAACTTG 854
Query 721 AAATGGGAGTCGCGGGAGTCGCTATAGCTATGGTTTTGACAAATCTCAACCTTGTAGTCC 780
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 855 AGATGGGAGTAGCGGGAGTCGCTATAGCTATGGTTTTGACAAATCTCAACCTTGTAGTCC 914
Query 781 TCTTATCTTCCTTTGTGTATTTCACGAGCGTGCATAGTGACACATGGGTCCCAATTACTA 840
||||||| || |||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 915 TCTTATCCTCTTTTGTGTATTTCACTAGCGTGCATAGTGATACATGGGTCCCAATTACTA 974
Query 841 TTGACTCCCTTAAAGGTTGGTCATCTTTGCTCTCACTTGCCATACCCACTTGTGTGTCTG 900
||||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 975 TTGACTCTCTTAAAGGTTGGTCGGCTTTGCTCTCACTTGCCATACCCACTTGTGTATCTG 1034
Query 901 TTTGTTTGGAGTGGTGGTGGTACGAGTTCATGATCATTTTGTGTGGACTTTTGGCTAACC 960
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1035 TTTGTTTGGAGTGGTGGTGGTACGAGTTTATGATCATTTTGTGTGGACTTTTGGCTAACC 1094
Query 961 CAAGAGCCACCGTGGCTTCCATGGGAATCTTGATCCAAACGACGGCTTTGGTCTACGTAT 1020
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1095 CAAGAGCCACCGTGGCTTCCATGGGAATCTTGATCCAAACGACGGCTTTGGTCTACGTCT 1154
Query 1021 TCCCATCTTCACTCAGCCTTGGTGTCTCTACAAGAATTAGCAACGAGCTTGGGGCTAAAC 1080
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1155 TCCCATCCTCTCTCAGCCTTGGTGTCTCTACAAGAATTAGCAACGAGCTTGGGGCTAAAC 1214
Query 1081 GCCCGGCCAAAGCTCGTGTATCCATGATCATTTCACTCTTCTGCGCGATCACCTTAGGCT 1140
| ||||| |||||||| |||||||||||||| |||||||||||||||||| ||||||||
Sbjct 1215 GTCCGGCGAAAGCTCGGGTATCCATGATCATCTCACTCTTCTGCGCGATCGCCTTAGGCC 1274
Query 1141 TAATGGCAATGGTGTTTGCTGTGCTGGTTAGGCACCATTGGGGTCGCATGTTTACCACGG 1200
||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 1275 TAATGGCGATGGTGTTTGCTGTGCTGGTTAGGCACCATTGGGGACGCTTGTTTACCACGG 1334
Query 1201 ATGCAGAAATTCTTCAGCTGACTTCCATCGCATTGCCCATTGTGGGGTTATGTGAGCTCG 1260
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1335 ATGCAGAGATTCTTCAGCTGACTTCCATCGCATTACCCATTGTGGGGTTATGTGAGCTCG 1394
Query 1261 GAAACTGTCCTCAAACGACTGGTTGTGGGGTTTTAAGAGGCTGTGCAAGACCAACACTTG 1320
|||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||
Sbjct 1395 GAAACTGTCCTCAAACAACCGGTTGTGGGGTTTTAAGAGGCTGTGCAAGACCTACACTTG 1454
Query 1321 GTGCCAACATAAACTTGGGTTCATTTTACTTTGTGGGCATGCCGGTCGCTATTCTGTTTG 1380
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1455 GTGCCAACATAAACTTGGGTTCATTTTACTTTGTGGGCATGCCAGTCGCTATTCTGTTTG 1514
Query 1381 GGttttttttCAAACAAGGGTTTCCAGGTCTCTGGCTCGGGTTGCTTGCAGCTCAAGCAA 1440
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1515 GGTTTGTTTTCAAACAAGGGTTTCCAGGTCTCTGGTTCGGGTTGCTTGCAGCTCAAGCAA 1574
Query 1441 CTTGTGCTTCTCTCATGTTGTGTGCACTTTTGAGAACAGATTGGGCAGTCCAAGCGGAGA 1500
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 1575 CTTGTGCTTCTCTCATGTTGTGTGCACTTTTGAGAACAGATTGGAAAGTCCAAGCCGAGA 1634
Query 1501 GAGCTGAAGAGCTGACGTCTCAAACTCCCGGAAAGACTCCTCCTCTTCTCCCCATCGCCA 1560
||||||||||||||||||| ||||||||||||||| |||| || |||||||||||||| |
Sbjct 1635 GAGCTGAAGAGCTGACGTCACAAACTCCCGGAAAGTCTCCGCCCCTTCTCCCCATCGCAA 1694
Query 1561 GGTCTAAGAACCTGTCTAGCTCCGGTACAGAAGATATGATGAGAACCATGTTGGTTTAGA 1620
| || |||| || ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1695 GCTCAAAGAGCCGGTCTACCTCCGGTACAGAAGATATGATGAGAACCATGTTGGTTTAGA 1754
Query 1621 TTGATAGCTATTCTTTGG 1638
|||||||||||||| |||
Sbjct 1755 TTGATAGCTATTCTCTGG 1772
> AT5G49138.1 | Symbols: | other RNA | chr5:19915868-19917277
REVERSE LENGTH=1410
Length=1410
Score = 58.4 bits (31), Expect = 2e-07
Identities = 33/34 (97%), Gaps = 0/34 (0%)
Strand=Plus/Minus
Query 900 GTTTGTTTGGAGTGGTGGTGGTACGAGTTCATGA 933
||||| ||||||||||||||||||||||||||||
Sbjct 436 GTTTGCTTGGAGTGGTGGTGGTACGAGTTCATGA 403
> AT5G49130.1 | Symbols: | MATE efflux family protein | chr5:19915872-19917525
FORWARD LENGTH=1541
Length=1541
Score = 58.4 bits (31), Expect = 2e-07
Identities = 33/34 (97%), Gaps = 0/34 (0%)
Strand=Plus/Plus
Query 900 GTTTGTTTGGAGTGGTGGTGGTACGAGTTCATGA 933
||||| ||||||||||||||||||||||||||||
Sbjct 858 GTTTGCTTGGAGTGGTGGTGGTACGAGTTCATGA 891
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80973479085
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5