BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg925173 Length=1639 Score E Sequences producing significant alignments: (Bits) Value AT1G58340.1 | Symbols: ZF14 | MATE efflux family protein | chr1... 2566 0.0 AT5G49138.1 | Symbols: | other RNA | chr5:19915868-19917277 RE... 58.4 2e-07 AT5G49130.1 | Symbols: | MATE efflux family protein | chr5:199... 58.4 2e-07 > AT1G58340.1 | Symbols: ZF14 | MATE efflux family protein | chr1:21653008-21655439 FORWARD LENGTH=2075 Length=2075 Score = 2566 bits (1389), Expect = 0.0 Identities = 1555/1638 (95%), Gaps = 0/1638 (0%) Strand=Plus/Plus Query 1 GTTTACTCGTCTCGAGAATCATGTGTAACTCAAAACCATCTTCTGCTTCCTCTTCCTTAT 60 |||||||| ||| |||||||||||||| |||||||||||||||||||| |||||||||| Sbjct 135 GTTTACTCCTCTTAAGAATCATGTGTAATTCAAAACCATCTTCTGCTTCATCTTCCTTAT 194 Query 61 TATCTTGTAAAGACAAAACCCATTTCTCAAAACTCGAAACCTGTGATACAGATAATCCTC 120 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 195 TATCTTGTAAAGACAAAACCCATATCTCAAAACTCGAAACCTGTGATACAGATAATCCTC 254 Query 121 ATTATTCCGACTTCACGGATAATGATTCTCTAGACCTTAAAAGATGGCCAACTTTTCTGG 180 ||||||| || |||| ||||| ||||||||||||||||||||||||||||| |||||||| Sbjct 255 ATTATTCTGAATTCAGGGATACTGATTCTCTAGACCTTAAAAGATGGCCAAGTTTTCTGG 314 Query 181 AGGGCTTAGAGGAAGTGAAGGCAATAGGAAGAATCTCTGGGCCGACGGCGATGACCGGGC 240 |||||||||||||||||||||| || |||| ||||||||||||||||||||||||||||| Sbjct 315 AGGGCTTAGAGGAAGTGAAGGCGATCGGAAAAATCTCTGGGCCGACGGCGATGACCGGGC 374 Query 241 TTCTTATGTACTCAAGAGCAATGATATCGATGCTGTTCCTAGGCTACCTCGGCGAGCTTG 300 ||||||||||||||||||| |||||||||||||||||| ||||||||||||| ||||||| Sbjct 375 TTCTTATGTACTCAAGAGCGATGATATCGATGCTGTTCTTAGGCTACCTCGGTGAGCTTG 434 Query 301 AGTTAGCCGGAGGATCTCTCTCCATAGGCTTTGCCAATATCACCGGCTACTCCGTCATCT 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 435 AGTTAGCCGGAGGATCTCTCTCCATAGGCTTTGCCAATATCACCGGCTACTCCGTCATCT 494 Query 361 CCGGTTTGTCCATGGGGATGGAACCAATCTGCGGCCAAGCCTACGGAGCTAAACAAATGA 420 ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| Sbjct 495 CCGGTTTGTCCATGGGGATGGAACCAATCTGTGGCCAAGCATACGGAGCTAAACAAATGA 554 Query 421 AGCTTTTAGGACTAACCCTTCAAAGAACCGTCCTCCTACTCCTCTCCTGCTCGGTCCCTA 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 555 AGCTTTTAGGACTAACCCTTCAAAGAACCGTCCTCCTACTCCTCTCCTGCTCGGTCCCTA 614 Query 481 TATCTTTCTCTTGGCTCAACATGCGTCGAATCCTCTTATGGTGTGGCCAAGACGAAGAGA 540 | || ||||| |||||||||||||| ||||||||||||||||| |||||||| ||||||| Sbjct 615 TCTCCTTCTCGTGGCTCAACATGCGCCGAATCCTCTTATGGTGCGGCCAAGATGAAGAGA 674 Query 541 TCTCCACCGTTGCTCAAAAGTTCCTTCTCTTCGCTATCCCTGACCTCTTCCTCCTCTCTC 600 ||||| | ||||||||| |||||||||| ||||| ||||||||||||||||| ||||||| Sbjct 675 TCTCCTCTGTTGCTCAACAGTTCCTTCTATTCGCCATCCCTGACCTCTTCCTTCTCTCTC 734 Query 601 TACTTCATCCTCTTCGCATTTACCTTCGAACACAAAACATTACATTACCCGTGACTTACT 660 | ||||| |||||||| |||||||| |||||||||||||||||||| ||||||||||||| Sbjct 735 TGCTTCACCCTCTTCGAATTTACCTCCGAACACAAAACATTACATTGCCCGTGACTTACT 794 Query 661 CTACGGCCGTGTCCGTTCTCCTCCACGTTCCTTTGAACTACCTCCTAGTGGTGAAACTGG 720 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 795 CCACGGCCGTGTCCGTTCTCCTCCACGTTCCTTTGAACTACCTCCTAGTGGTGAAACTTG 854 Query 721 AAATGGGAGTCGCGGGAGTCGCTATAGCTATGGTTTTGACAAATCTCAACCTTGTAGTCC 780 | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 855 AGATGGGAGTAGCGGGAGTCGCTATAGCTATGGTTTTGACAAATCTCAACCTTGTAGTCC 914 Query 781 TCTTATCTTCCTTTGTGTATTTCACGAGCGTGCATAGTGACACATGGGTCCCAATTACTA 840 ||||||| || |||||||||||||| |||||||||||||| ||||||||||||||||||| Sbjct 915 TCTTATCCTCTTTTGTGTATTTCACTAGCGTGCATAGTGATACATGGGTCCCAATTACTA 974 Query 841 TTGACTCCCTTAAAGGTTGGTCATCTTTGCTCTCACTTGCCATACCCACTTGTGTGTCTG 900 ||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||| Sbjct 975 TTGACTCTCTTAAAGGTTGGTCGGCTTTGCTCTCACTTGCCATACCCACTTGTGTATCTG 1034 Query 901 TTTGTTTGGAGTGGTGGTGGTACGAGTTCATGATCATTTTGTGTGGACTTTTGGCTAACC 960 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1035 TTTGTTTGGAGTGGTGGTGGTACGAGTTTATGATCATTTTGTGTGGACTTTTGGCTAACC 1094 Query 961 CAAGAGCCACCGTGGCTTCCATGGGAATCTTGATCCAAACGACGGCTTTGGTCTACGTAT 1020 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1095 CAAGAGCCACCGTGGCTTCCATGGGAATCTTGATCCAAACGACGGCTTTGGTCTACGTCT 1154 Query 1021 TCCCATCTTCACTCAGCCTTGGTGTCTCTACAAGAATTAGCAACGAGCTTGGGGCTAAAC 1080 ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1155 TCCCATCCTCTCTCAGCCTTGGTGTCTCTACAAGAATTAGCAACGAGCTTGGGGCTAAAC 1214 Query 1081 GCCCGGCCAAAGCTCGTGTATCCATGATCATTTCACTCTTCTGCGCGATCACCTTAGGCT 1140 | ||||| |||||||| |||||||||||||| |||||||||||||||||| |||||||| Sbjct 1215 GTCCGGCGAAAGCTCGGGTATCCATGATCATCTCACTCTTCTGCGCGATCGCCTTAGGCC 1274 Query 1141 TAATGGCAATGGTGTTTGCTGTGCTGGTTAGGCACCATTGGGGTCGCATGTTTACCACGG 1200 ||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||| Sbjct 1275 TAATGGCGATGGTGTTTGCTGTGCTGGTTAGGCACCATTGGGGACGCTTGTTTACCACGG 1334 Query 1201 ATGCAGAAATTCTTCAGCTGACTTCCATCGCATTGCCCATTGTGGGGTTATGTGAGCTCG 1260 ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1335 ATGCAGAGATTCTTCAGCTGACTTCCATCGCATTACCCATTGTGGGGTTATGTGAGCTCG 1394 Query 1261 GAAACTGTCCTCAAACGACTGGTTGTGGGGTTTTAAGAGGCTGTGCAAGACCAACACTTG 1320 |||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||| Sbjct 1395 GAAACTGTCCTCAAACAACCGGTTGTGGGGTTTTAAGAGGCTGTGCAAGACCTACACTTG 1454 Query 1321 GTGCCAACATAAACTTGGGTTCATTTTACTTTGTGGGCATGCCGGTCGCTATTCTGTTTG 1380 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1455 GTGCCAACATAAACTTGGGTTCATTTTACTTTGTGGGCATGCCAGTCGCTATTCTGTTTG 1514 Query 1381 GGttttttttCAAACAAGGGTTTCCAGGTCTCTGGCTCGGGTTGCTTGCAGCTCAAGCAA 1440 ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1515 GGTTTGTTTTCAAACAAGGGTTTCCAGGTCTCTGGTTCGGGTTGCTTGCAGCTCAAGCAA 1574 Query 1441 CTTGTGCTTCTCTCATGTTGTGTGCACTTTTGAGAACAGATTGGGCAGTCCAAGCGGAGA 1500 |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| Sbjct 1575 CTTGTGCTTCTCTCATGTTGTGTGCACTTTTGAGAACAGATTGGAAAGTCCAAGCCGAGA 1634 Query 1501 GAGCTGAAGAGCTGACGTCTCAAACTCCCGGAAAGACTCCTCCTCTTCTCCCCATCGCCA 1560 ||||||||||||||||||| ||||||||||||||| |||| || |||||||||||||| | Sbjct 1635 GAGCTGAAGAGCTGACGTCACAAACTCCCGGAAAGTCTCCGCCCCTTCTCCCCATCGCAA 1694 Query 1561 GGTCTAAGAACCTGTCTAGCTCCGGTACAGAAGATATGATGAGAACCATGTTGGTTTAGA 1620 | || |||| || ||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1695 GCTCAAAGAGCCGGTCTACCTCCGGTACAGAAGATATGATGAGAACCATGTTGGTTTAGA 1754 Query 1621 TTGATAGCTATTCTTTGG 1638 |||||||||||||| ||| Sbjct 1755 TTGATAGCTATTCTCTGG 1772 > AT5G49138.1 | Symbols: | other RNA | chr5:19915868-19917277 REVERSE LENGTH=1410 Length=1410 Score = 58.4 bits (31), Expect = 2e-07 Identities = 33/34 (97%), Gaps = 0/34 (0%) Strand=Plus/Minus Query 900 GTTTGTTTGGAGTGGTGGTGGTACGAGTTCATGA 933 ||||| |||||||||||||||||||||||||||| Sbjct 436 GTTTGCTTGGAGTGGTGGTGGTACGAGTTCATGA 403 > AT5G49130.1 | Symbols: | MATE efflux family protein | chr5:19915872-19917525 FORWARD LENGTH=1541 Length=1541 Score = 58.4 bits (31), Expect = 2e-07 Identities = 33/34 (97%), Gaps = 0/34 (0%) Strand=Plus/Plus Query 900 GTTTGTTTGGAGTGGTGGTGGTACGAGTTCATGA 933 ||||| |||||||||||||||||||||||||||| Sbjct 858 GTTTGCTTGGAGTGGTGGTGGTACGAGTTCATGA 891 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 80973479085 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5