BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925174
Length=733
Score E
Sequences producing significant alignments: (Bits) Value
AT1G58330.1 | Symbols: ZW2 | transcription factor-related | chr... 1018 0.0
> AT1G58330.1 | Symbols: ZW2 | transcription factor-related | chr1:21641130-21642041
FORWARD LENGTH=912
Length=912
Score = 1018 bits (551), Expect = 0.0
Identities = 675/735 (92%), Gaps = 7/735 (1%)
Strand=Plus/Plus
Query 1 CTTGGAAGTATACATGAGTCATGCCAAGCACCAGCAGCTCTGAAACCTTTGCGAGCTTCT 60
||||||| |||| |||||||||||||| ||| |||||||||||||| |||||||||||||
Sbjct 1 CTTGGAACTATATATGAGTCATGCCAATCACTAGCAGCTCTGAAACTTTTGCGAGCTTCT 60
Query 61 TTAATGACTGGCTTCT-CCGTCACAGGCAATTCGTCCAAGAACTTTCACACCTTGCTGAT 119
| |||||||||| ||| |||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 61 TCAATGACTGGC-TCTGCCGTCACAGGCAATTCGTCCAACAACTTGCACACCTTGCTGAT 119
Query 120 GAAACCACCA--G-AACTCCGGTAGAAGAAGAATCACTTTTGTCTAACTTTCTTTCTCAC 176
||||| |||| | |||||| ||||||||||||| ||| || ||||||||||||||||
Sbjct 120 GAAACAACCATTGTAACTCCAATAGAAGAAGAATCTCTTGTGAGTAACTTTCTTTCTCAC 179
Query 177 TGTCTCCAATACTACGAAGAGAAATCACTTGCCATGTCCGTGGCCGGTGACGATGTATAC 236
| ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 180 TATCTCCAATACTACGAAGAGAAATCAGTTGCCATGTCCGTGGCCGGTGACGATATATAT 239
Query 237 GATTTCTTCTCCCCACCATGGCTCAGCTCATACGAGAAACTCATCCTCTGGATTGGAGGT 296
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 240 GATTTCTTCTCTCCACCATGGCTCAGCTCATACGAGAAACTCATCCTCTGGATCGGAGGT 299
Query 297 TTCAAACCAGGTATGGTTTTTAAACTCATAACCACTTCTGTTAACGACCTTACGAGCCAC 356
|| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 300 TTTAAACCAGGTATGGTTTTTAAGCTCATAACCACTTCTGTTAATGACCTTACGAGCCAC 359
Query 357 CAAATAGACCAACTTGAGAACATCCGGTTAGAGACTAAACGGAGGGAGAGAGATTTGATG 416
|||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 360 CAAATAGACCAACTCGAGAGCATTCGGTTAGAGACTAAACGGAGGGAGAGAGATTTGATG 419
Query 417 CGAAGGTTTGCGCTTCTACAACAGAGCGTGGGGGATCCGCCTCTGATGGTTCCATTTAGG 476
|||||||| ||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 420 CGAAGGTTCGCGCTTCTACAACAGAGCGTGGGGGATCCACTTCTGATGGTTCCATTTAGG 479
Query 477 CGCATCGGTGTGTTGAGCCTCGGCGAAGGAGAGCAGTCAGAAATGGAGGAGGCAATGGAT 536
|||||||| |||||||| || ||||||||||||||| ||||||||||||| ||||||||
Sbjct 480 CGCATCGGAGTGTTGAGGCTTGGCGAAGGAGAGCAGCCAGAAATGGAGGATGCAATGGAG 539
Query 537 GTTATGAAGGAAGAGATGATTACGGCCATGAAGAACGCTGATCAACTCCGGTGTGTGACG 596
||| |||||| ||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 540 GTTTTGAAGGTAGAGATGATTAAAGCGATGAAGAACGCTGATCAACTCCGGTGTGTGACG 599
Query 597 GTTGGGAAAGTGGTGGAGGTTCTAAATCCACGGCAGGCGATTAAGCTGCTAAGAGCCGCC 656
||||||||||||||||||||||| |||||||||||| |||| |||||||||||||||||
Sbjct 600 GTTGGGAAAGTGGTGGAGGTTCTGAATCCACGGCAGTCGATCAAGCTGCTAAGAGCCGCT 659
Query 657 GGAGAGTTTTATCTCCTCCTGAGAGATTTAGGTGTACAGATAGAAACAGTGCGTTGATAG 716
|||||||||||||||| ||||||||||||||||| ||| ||||||||| | ||| |||
Sbjct 660 GGAGAGTTTTATCTCCGGCTGAGAGATTTAGGTGTGTAGAGAGAAACAGTTCTTTGCTAG 719
Query 717 GACT--AATGTTCTT 729
|||| |||||||||
Sbjct 720 GACTTTAATGTTCTT 734
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35565776076
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5