BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg925181

Length=277
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G02180.1 | Symbols:  | DC1 domain-containing protein | chr4:...  97.1    7e-20


> AT4G02180.1 | Symbols:  | DC1 domain-containing protein | chr4:959964-963517 
FORWARD LENGTH=2970
Length=2970

 Score = 97.1 bits (52),  Expect = 7e-20
 Identities = 96/117 (82%), Gaps = 4/117 (3%)
 Strand=Plus/Plus

Query  57   CATCTTATGATGCCTTGGAATGATCTAAGGAAAGGTGATTGTTGTGAACGTTTTGAT-GC  115
            |||||||||||||||||||||||||||||||||||||||||||||| || | | ||  ||
Sbjct  142  CATCTTATGATGCCTTGGAATGATCTAAGGAAAGGTGATTGTTGTGGAC-TCTCGAAAGC  200

Query  116  TATTAATGATGGCTACTACTGCAAAA-CTTGTGATTCCTTCATCCACAAGACATGTG  171
            | | | || ||| || || ||||||| || | ||||  |||  |||||||| |||||
Sbjct  201  TGTCAGTGTTGGTTATTATTGCAAAAGCT-GCGATTTTTTCGCCCACAAGAAATGTG  256



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12717740497


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5