BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925187
Length=1253
Score E
Sequences producing significant alignments: (Bits) Value
AT1G58080.1 | Symbols: ATATP-PRT1, HISN1A, ATP-PRT1 | ATP phosp... 1351 0.0
> AT1G58080.1 | Symbols: ATATP-PRT1, HISN1A, ATP-PRT1 | ATP phosphoribosyl
transferase 1 | chr1:21504314-21507540 REVERSE LENGTH=1595
Length=1595
Score = 1351 bits (731), Expect = 0.0
Identities = 1097/1270 (86%), Gaps = 40/1270 (3%)
Strand=Plus/Plus
Query 12 AGCCACAACAACGATGTCTCTCCTTCTCCCCACCAATTTACTACAAT-GCC--GTTCTTC 68
|||||| ||||| ||||||||||||||||| || ||||||| ||||| || ||||||
Sbjct 100 AGCCAC-ACAACAATGTCTCTCCTTCTCCCTACGAATTTACAACAATACCCTTCTTCTTC 158
Query 69 CTCCCT-CCTTC-TC--C-TCTCTCC-GTCT--TCCT-CAACCACCGCCTTT-TCCGCCA 118
|||| | || || || | || ||| ||| ||| | |||||| |||| |||| ||
Sbjct 159 CTCCTTCCCATCTTCAACACCTATCCTATCTCCGCCTCCTTCCACCG-CTTTCTCCGTCA 217
Query 119 TCGCACCTTGCCGGATATGCT-TAAGATTGGTCACTTCTTGCGTC-GCATATGATCAAAG 176
||| |||| | |||| ||| | | |||||||| |||||||| ||| || | ||||||
Sbjct 218 TCGTACCTCGTCGGAGATG-TCTCAGATTGGTTACTTCTTGTGTCTCCA-CCGTTCAAAG 275
Query 177 CTCTGTCG---TAAACAG-T--TCT---G---CT-C-CC-AAAGCTGTTGTCGTAGAGCG 221
||| |||| |||| | | ||| | || | || ||||||||||| |||||
Sbjct 276 CTCCGTCGCAACAAACGGTTCCTCTCCAGCTCCTGCTCCGGCCGCTGTTGTCGTTGAGCG 335
Query 222 AGACCAGATTCGCCTTGGTCTTGTTAGCAAGGGACGCATGGCCACCAATTCGCTCAATCT 281
||||||||||| ||||||||| ||| || ||||| ||||| | || | || ||||
Sbjct 336 TGACCAGATTCGTCTTGGTCTTCCTAGTAAAGGACGTATGGCTGCTGATGCAATCGATCT 395
Query 282 TCTCAAGGACTGTCAACTGTTCGTGAATCAAGTCAATCCTAGGCAATATGTTGCACAAAT 341
||||||||||||||||||||| || || ||||||||||||||||||||||||||||| ||
Sbjct 396 TCTCAAGGACTGTCAACTGTTTGTTAAACAAGTCAATCCTAGGCAATATGTTGCACAGAT 455
Query 342 TCCCCAGTTACCAAACACTAAAGTCTGTTTTCAACGGCCAAAAGACATCGTCACG-AAGT 400
||||||||||||||||||| ||||||| ||||||||||||||||| || |||| | ||||
Sbjct 456 TCCCCAGTTACCAAACACTGAAGTCTGGTTTCAACGGCCAAAAGATATTGTCA-GAAAGT 514
Query 401 TACTCTCAGGAGACTTGGATCTAGGTATCGTTGGTCTTGACAAACTTCGTGAATATGGTC 460
||||||||||||| |||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 515 TACTCTCAGGAGATTTGGATCTAGGTATCGTTGGTCTTGACACACTTAGTGAATATGGTC 574
Query 461 AGGAAAATGAAGATCTTATCATTGTCCATGAAGCTCTAAACTTCGGAGGCTACT-ATTTG 519
||||||||||||||||||||||||||||||||||||| ||||| |||| || | | ||
Sbjct 575 AGGAAAATGAAGATCTTATCATTGTCCATGAAGCTCTCAACTTTGGAGACT-GTCACCTG 633
Query 520 TCGATTGCGATACCCAACTATGGAATTTTTGAGAATATAAAGTCTCTGAAGGAGCTAGCA 579
|| |||||||| || |||||||| || |||||||||||||| |||||||||||||||||
Sbjct 634 TCTATTGCGATTCCAAACTATGGGATATTTGAGAATATAAATTCTCTGAAGGAGCTAGCG 693
Query 580 CAAATGCCCCAATGGAGTGAAGAGAGACCCTTACGCGTT-GCTACTGGCTTCACATATCT 638
|||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||
Sbjct 694 CAAATGCCCCAATGGAGTGAAGAGAGACCCTTACGC-TTAGCTACTGGCTTCACTTATCT 752
Query 639 TGGCCCCAAATTTATGAAAGAAAACGGTATAAAGCATGTGACGTTTTCAACTGCATCCGG 698
||||||||||||||||||||||| || |||||||||||| ||||||||||||| |||
Sbjct 753 CGGCCCCAAATTTATGAAAGAAAATGGCATAAAGCATGTGGTGTTTTCAACTGCAGACGG 812
Query 699 AGCTCTGGAGGCAGCTCCGGCGATGGGTATAGCTGATGCCATTTTGGACCTTGTGAGTAG 758
||| |||||||||||||| |||||||| |||||||||||||||||||| |||||||||||
Sbjct 813 AGCACTGGAGGCAGCTCCAGCGATGGGGATAGCTGATGCCATTTTGGATCTTGTGAGTAG 872
Query 759 TGGGACAACACTCAAAGAGAACAACTTAAAAGAGATAGAAGGAGGTGTTGTGCTGCAATG 818
||| | ||||||||||||||||||||| ||||| || |||||||||||||||||| || |
Sbjct 873 TGGTATAACACTCAAAGAGAACAACTTGAAAGAAATTGAAGGAGGTGTTGTGCTGGAAAG 932
Query 819 TAAGGCCGTACTCGTGGCAAGTAGAAGAGCATTGACCAAGAGAAAAGAGGCACTAAATAC 878
|||| | ||| |||||||||||||||||||| | | ||||||||| ||||||||| ||
Sbjct 933 CCAGGCGGCACTTGTGGCAAGTAGAAGAGCATTAAACGAGAGAAAAGGGGCACTAAACAC 992
Query 879 AGTACAAGAAATTCTCGAGAGATTGGAGGCCCATCTGAAGGCGGATAGCCAATTTACTGT 938
|||||| || ||||| |||||||||||||||||||| ||||||||| ||||||| |||||
Sbjct 993 AGTACACGAGATTCTTGAGAGATTGGAGGCCCATCTAAAGGCGGATGGCCAATTCACTGT 1052
Query 939 TGTTGCAAACTTCAGAGGAAGTAGTGCTGAGGAAGTGGCTGAGCGTGTGTTGAGCCAACC 998
|||||||||| | ||||||| ||||||| |||||||||||||||||||| ||||||||||
Sbjct 1053 TGTTGCAAACATGAGAGGAAATAGTGCTCAGGAAGTGGCTGAGCGTGTGCTGAGCCAACC 1112
Query 999 ATCATTGTCAGGATGGCAGGGACCAACAATAAGCCCAGTTTATTGTAGACGAGGTGGAAA 1058
|||||||||||||| ||||||||| |||||||||||||| || |||| || | ||||||
Sbjct 1113 ATCATTGTCAGGATTGCAGGGACCGACAATAAGCCCAGTGTACTGTACACAAAATGGAAA 1172
Query 1059 AATATCAATTGACTACTATGCCATTGTGATTTGTGTACCAAAAAAGGCCCTATACGACTC 1118
| |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1173 AGTATCGGTTGACTACTATGCCATCGTGATTTGTGTACCAAAAAAGGCCCTATACGACTC 1232
Query 1119 TGTGAAGCACCTGAGAGCGGTGGGAGGCAGTGGGGTATTGGTTTCACCTTTGACCTACAT 1178
||||||||| || ||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 1233 TGTGAAGCAACTTAGAGCGGCCGGAGGCAGTGGGGTATTAGTTTCACCTTTGACCTACAT 1292
Query 1179 TTTTGATGAGGATACTCCAAGATGGGGTCAGTTCCTCAGGAACCTCGGGATTTAAATGTT 1238
||||||||||||||||||||||||||||||| |||| || |||||||||||||||||| |
Sbjct 1293 TTTTGATGAGGATACTCCAAGATGGGGTCAGCTCCTGAGAAACCTCGGGATTTAAATGCT 1352
Query 1239 TTGGTAAGGA 1248
||||||||||
Sbjct 1353 TTGGTAAGGA 1362
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61596068715
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5