BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925188
Length=1154
Score E
Sequences producing significant alignments: (Bits) Value
AT1G58090.1 | Symbols: | F-box and associated interaction doma... 1264 0.0
AT1G53325.1 | Symbols: | F-box associated ubiquitination effec... 481 8e-135
AT1G59630.1 | Symbols: | F-box associated ubiquitination effec... 457 1e-127
AT5G37040.1 | Symbols: | F-box family protein | chr5:14639135-... 342 4e-93
> AT1G58090.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr1:21510510-21511625 FORWARD LENGTH=1116
Length=1116
Score = 1264 bits (684), Expect = 0.0
Identities = 995/1138 (87%), Gaps = 50/1138 (4%)
Strand=Plus/Plus
Query 25 ATGGTGGAGAGAAAGCTTCCATTAGATCTGGAAGAAGAGATACTCTTTCGAGTTCCACCT 84
|||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGTGTCGAAAAAGCTTCCATTAGATCTGGAAGAAGAGATACTCTTTCGAGTTCCACCT 60
Query 85 CGATCTCTCCTTCGCTTCAGATCCGTTTGCAGAGAATGGAACACTCTTTTCCACAATAAG 144
||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 61 CGATCTCTCGTTCGCTTCAGATCCGTTTGCAGAGAATGGAACACTCTTTTCAAGAATAAG 120
Query 145 AGATTCATCAACAAAAACTTTGCTTGCGCTCGCCCAGAATTCATGTTAAAGACTTATTCC 204
|||||||||||||||||||||||||||| ||| |||||| |||||||||| || ||||
Sbjct 121 AGATTCATCAACAAAAACTTTGCTTGCGGTCGGCCAGAAATCATGTTAAATACACATTCA 180
Query 205 CATATTTATTCGATAAGCGTCGATCTCAACGACG---ATCCAACTATAAAGGTGCGTGAT 261
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 181 CATATTTATTCGATAAGCGTCGATCTCAAAGACGAAAATCCAACTATAAAGGTGCGTGAT 240
Query 262 TTACGCTTTGATCCTTT-A-----CGCGGTCGCCA--T-TAT--AATCT-CGATGGTAAC 309
||||||||||||| ||| | |||||| || | ||| |||| ||||||||||
Sbjct 241 TTACGCTTTGATCATTTAAGTTGCCGCGGTTATCATCTGTATGGGATCTGCGATGGTAAC 300
Query 310 TTCTTCTTGTATGA-CTTTCATGAA-GGAGGCGGATGCGTGGTTTCGAACCCGTTG--TT 365
|||||| ||||| | ||||| | || ||||||||| |||| |||| |||||||||| ||
Sbjct 301 TTCTTCATGTAT-AGCTTTC-TTAATGGAGGCGGAGGCGTTGTTTGGAACCCGTTGTTTT 358
Query 366 -GAGACAGAATAAATGGTTTGCAAAGGCTAAGAATATATGTGGCAAGTACATGGGTTACG 424
|||||||| ||||||| |||| |||||| |||||| |||||||||| ||| |||||||
Sbjct 359 GGAGACAGACTAAATGGATTGCCAAGGCTGAGAATACATGTGGCAAGGCCATTGGTTACG 418
Query 425 ATGGTAGTAGACCCGAAAAGAGTTACAAGATTATTGGGATGTGGGAACGTCATTCGCTGG 484
||||||||||||||||||||||||||||||||| | ||| | | | | || ||| |||
Sbjct 419 ATGGTAGTAGACCCGAAAAGAGTTACAAGATTA-TCGGAAG-GAGTA-GTTGTTC-TTGG 474
Query 485 -ATGG--AA-TTACT-ACGACATATTTAGTCTCCGAATTTGCAGCCAATGCTTACTGGAA 539
| || || ||||| | ||||||| ||||| |||||||||| ||||||| |||||
Sbjct 475 CAGGGTAAAGTTACTGA-TACATATTCAGTCTTCGAATTTGCAACCAATGC---GTGGAA 530
Query 540 GGTTACTGATCATACCAGTTTTTACGAAGAGCCAGCATTTA-GGAGTGACTCGTCCGGTA 598
|||||||||||||||| ||||| ||||| |||||| ||| | ||| || | |||||
Sbjct 531 GGTTACTGATCATACCCGTTTTCACGAAAAGCCAGAATTAATGGA-CGA--C-TCCGG-- 584
Query 599 ATAATAGGGTCTCCCTGAATGGAAATTTGTACTGGACAGCTCATACTTATCCCGAAACTG 658
||||||||||||||||||||||||||||||||||||| ||| || |||| | ||||
Sbjct 585 ----TAGGGTCTCCCTGAATGGAAATTTGTACTGGACAGCTTATAATTCTCCCCACACTG 640
Query 659 GTCAGTATTTCATCAG-AATGCTCGATTTTTCGAAAGAGATAGAAATGTGTCAAAAGACA 717
|||||||||||||| | ||||||||||||||||||||||||||||| | ||| ||||||
Sbjct 641 GTCAGTATTTCATC-GCAATGCTCGATTTTTCGAAAGAGATAGAAAAGAGTCGAAAGACC 699
Query 718 TTCTGTGTTTTACCGTGTAAGGaaaaaaaaaGTACTACACATACTCGTGTCCTCTCGATG 777
|| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 700 TTTTGTGTTTTACCGTGTAAGGGGGAAAAAAGTACTACACATACTCGTATCCTCTCGATT 759
Query 778 TACAAGGGAGATCGGTTTTCAGTGTTAGAACAATCCAGAAAAACAAGAGAGATTGAGATT 837
||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 760 TACAAGGGAGATCGGTTTTCAGTGTTAGAACAATCCAAAAAAACAAGGGAGATTGAGATT 819
Query 838 TGGGTGACAAAGGATAAAATTAGTAATGCGGATAATGGAGATGACGTGGTGTGGATTAAG 897
||||||||||||||| ||||| |||| | |||| ||||||| || |||||||||||||||
Sbjct 820 TGGGTGACAAAGGATCAAATTGGTAACGGGGATGATGGAGACGATGTGGTGTGGATTAAG 879
Query 898 TTCATGACGGTCTCAATACCTGACTTCCCTATGGTACTTAGTCACATGTCTACAAAATA- 956
|||||||| ||||||| |||||||||||| || |||||||| |||| ||||||| ||
Sbjct 880 TTCATGACAGTCTCAAGACCTGACTTCCCCATATTACTTAGTTACATCTCTACAAGTTAC 939
Query 957 TTTCGTCGATAATAATATCTATGGAAAGAGCTTTGTTCTGTGTTGTCCAAGCAAGATACC 1016
||| ||||||||| ||||| |||| ||||||||||||||||||||||| ||||||| |||
Sbjct 940 TTT-GTCGATAATGATATCCATGGGAAGAGCTTTGTTCTGTGTTGTCCTAGCAAGAGACC 998
Query 1017 TAAAGCAGCTTGGGTGTATATTGTGAGGGGAGATCTGTGCAAAAAGATTAAGATAGATCA 1076
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 999 TAAAGCAGCTTGGGTGTATATTGTGAGGGGAGATTTGTGCAAAAAGATTAAGATAGATCA 1058
Query 1077 AGTGCTATGTGAGTTTGAGTCCTCTGTCTATGTTCCAAGTTTGATCACCATTCCTTGA 1134
|||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||
Sbjct 1059 AGTGCTATGTGAGTTTCAATCCTCTGTCTATGTTCCCAGTTTGATCACCATTCCTTGA 1116
> AT1G53325.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr1:19895227-19895733 REVERSE LENGTH=507
Length=507
Score = 481 bits (260), Expect = 8e-135
Identities = 441/525 (84%), Gaps = 25/525 (5%)
Strand=Plus/Plus
Query 617 ATGGAAATTTGTACTGGACAGCTCATACTTATCCCGAAACTGGTCAGTATTTCAT-CAGA 675
||||||||||||||||||||||| || | || || ||||||||||||||||||| || |
Sbjct 1 ATGGAAATTTGTACTGGACAGCT--TA-TAATTCCAAAACTGGTCAGTATTTCATCCA-A 56
Query 676 AT-GCTCGATTTTTCGAAAGAGATAGAAATGTGTCAAAAGACATTCTGTGTTTTACCGTG 734
|| |||||||||||| || || ||| | | | ||||| |||||| || |||| ||
Sbjct 57 ATGGCTCGATTTTTC-CAA-AG--AGACA--T-T--AAAGATGTTCTGTATTCTACCATG 107
Query 735 TAAGGaaaaaaaaaGTACTACACATACTCGTGTCCTCTCGATGTACAAGGGAGATCGGTT 794
||||| || ||||||||||| ||||||||| ||||||| || ||||| |||||||||||
Sbjct 108 TAAGGCGAAGAAAAGTACTACTCATACTCGTATCCTCTCTATTTACAAAGGAGATCGGTT 167
Query 795 TTCAGTGTTAGAACAATCCAGAAA-AACAAGAGAGATTGAGATTTGGGTGACAAAGGATA 853
||||||| | ||||||| || ||| |||||| |||||||||||||||||||||||| |||
Sbjct 168 TTCAGTGATGGAACAATGCA-AAAGAACAAGGGAGATTGAGATTTGGGTGACAAAGAATA 226
Query 854 AAATTAGTAATGCGGATAATGGAGATGACGTGGTGTGGATTAAGTTCATGACGGTCTCAA 913
||||| |||||| |||| ||||| | || || |||||||||||||||||||| |||||||
Sbjct 227 AAATTGGTAATGGGGATGATGGAAACGATGTTGTGTGGATTAAGTTCATGACTGTCTCAA 286
Query 914 TACCTGACTTCCCTATGGTACTTAGTCA-CATGTCTACAAAATATTTCGTCGATAATAAT 972
||||| ||||||| ||||||||| |||| || ||||||| || ||||||||| ||| |
Sbjct 287 TACCTAACTTCCCCATGGTACTTTGTCATAAT-TCTACAAGTTACTTCGTCGATGATAGT 345
Query 973 ATCTATGGAAAGAGCTTTGTTCTGTGTTGTCCAAGCAAGATACCTAAAGC-AGCTTGGGT 1031
|||| ||| |||||||| ||| | |||| | | | ||||| ||||||| | |||||||||
Sbjct 346 ATCTCTGGGAAGAGCTTCGTTTTATGTTTTTCTACCAAGAAACCTAAA-CAAGCTTGGGT 404
Query 1032 GTATATTGTGAGGGGAGATCTGTGCAAAAAGATTAAGATAGATCAAGT-GCTATGTGA-G 1089
|||||||||||||||||||||||||||||||||||||||||| |||| | ||||| | |
Sbjct 405 CTATATTGTGAGGGGAGATCTGTGCAAAAAGATTAAGATAGATGAAGTTG-TATGT-ACG 462
Query 1090 TTTGAGTCCTCTGTCTATGTTCCAAGTTTGATCACCATTCCTTGA 1134
|| | |||| || ||||||||| ||||||||| |||||||||||
Sbjct 463 TTCCAATCCTGTGCCTATGTTCCCAGTTTGATCTCCATTCCTTGA 507
> AT1G59630.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr1:21907177-21907955 REVERSE LENGTH=720
Length=720
Score = 457 bits (247), Expect = 1e-127
Identities = 417/496 (84%), Gaps = 23/496 (5%)
Strand=Plus/Plus
Query 646 TATCCCGAAACTGGTCAGTATTTCATCAG-AATGCTCGATTTTTCGAAAGAGATAGAAAT 704
|||||||| |||||||||| ||||||| | |||||||||| ||||||||||| | ||
Sbjct 241 TATCCCGACACTGGTCAGTGTTTCATC-GAAATGCTCGATCTTTCGAAAGAG---GTAA- 295
Query 705 GTGTCAAAAGA-CATTCTGTGTTTTACCGTGTAAGGaaaaaaaaaGTAC-TACACATACT 762
| ||||| | || ||| | |||||||||||| || |||||||| | || |||||
Sbjct 296 ---T--AAAGATC-TTTTGTATCCTACCGTGTAAGGCGAATAAAAGTACTTCCA-ATACT 348
Query 763 CGTGTCCTCTCGATGTACAAGGGAGATCGGTTTTCAGTGTTAGAACAATCCAGAAA-AAC 821
||| |||||||||| ||||||||||||||||||||||||||| ||||| || ||| |||
Sbjct 349 CGTATCCTCTCGATTTACAAGGGAGATCGGTTTTCAGTGTTACAACAAAGCA-AAAGAAC 407
Query 822 AAGAGAGATTGAGATTTGGGTGACAAAGGATAAAATTAGTAATGCGGATAATGGAGATGA 881
| | |||||| | |||||||||||| || | ||||| |||| | |||||||||||| ||
Sbjct 408 AGGGGAGATTAACATTTGGGTGACAGAGAAGGAAATTGGTAACGGGGATAATGGAGACGA 467
Query 882 CGTGGTGTGGATTAAGTTCATGACGGTCTCAATACCTGACTTCCCTATGGTACTTAGTCA 941
||||||||||| ||||||||||| |||||| |||||||||||| || ||||||||||
Sbjct 468 TGTGGTGTGGATGAAGTTCATGACTCTCTCAAGACCTGACTTCCCCATATTACTTAGTCA 527
Query 942 CATGTCTACAAAATA-TTTCGTCGATAATAATATCTATGGAAAGAGCTTTGTTCTGTGTT 1000
||| ||||||| || ||| ||||||||| |||||||||| |||||||| ||||||||||
Sbjct 528 CATCTCTACAAGTTACTTT-GTCGATAATGATATCTATGGCAAGAGCTTGGTTCTGTGTT 586
Query 1001 GTCCAAGCAAGATACCTAAAGC-AGCTTGGGTGTATATTGTGAGGGGAGATCTGTGCAAA 1059
|||| |||| || ||||| | | ||||||||| |||||||||||||||||||||||||||
Sbjct 587 GTCCTAGCACGAAACCTAGA-CAAGCTTGGGTCTATATTGTGAGGGGAGATCTGTGCAAA 645
Query 1060 AAGATTAAGATAGATCAAGTGCTATGTGAG-TTTGAGTCCTCTGTCTATGTTCCAAGTTT 1118
||||||||||||||| ||||| |||| || ||| |||||||||| |||||||| |||||
Sbjct 646 AAGATTAAGATAGATGGAGTGCAATGT-AGGTTTCAGTCCTCTGTTTATGTTCCCAGTTT 704
Query 1119 GATCACCATTCCTTGA 1134
||||||||| |||||
Sbjct 705 GATCACCATAACTTGA 720
> AT5G37040.1 | Symbols: | F-box family protein | chr5:14639135-14639934
FORWARD LENGTH=729
Length=729
Score = 342 bits (185), Expect = 4e-93
Identities = 297/347 (86%), Gaps = 24/347 (7%)
Strand=Plus/Plus
Query 25 ATGGTGGAGAGAAAGCTTCCATTAGATCTGGAAGAAGAGATACTCTTTCGAGTTCCACCT 84
|||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGTGCCGAAAAAGCTTCCATTAGATCTGGAAGAAGAGATACTCTTTCGAGTTCCACCT 60
Query 85 CGATCTCTCC-TTCGCTTCAGATCCGTTTGCAGAGAATGGAACACTCTTTTCCACA-ATA 142
|||||||||| || |||| ||||||||||||| |||||||||| |||||| ||| | |||
Sbjct 61 CGATCTCTCCATT-GCTTTAGATCCGTTTGCAAAGAATGGAACGCTCTTT-CCAGAGATA 118
Query 143 AGAGATTCATCAACAAAAACTTTGCTTGCGCTCGC-CCAGAATTCATGTTAAAGACTTAT 201
||||||| ||||||||||||||||||||||||| | ||||||||||| |||||||| |
Sbjct 119 AGAGATTAATCAACAAAAACTTTGCTTGCGCTC-CTCCAGAATTCATCTTAAAGACACGT 177
Query 202 TCCCATATTTATTCGATAAGCGTCGATCTCAACGACGA---TCCAACTATAAAGGTGCGT 258
||| |||||||||||||||||||| |||||||||| || |||||||||||| ||||||
Sbjct 178 TCCAATATTTATTCGATAAGCGTCAATCTCAACGATGACAATCCAACTATAAATGTGCGT 237
Query 259 GATTTACGCTTTG---ATCCTTTACGCGGTCGCCATTATA---AT----C-T-CGATGGT 306
|| ||| |||||| ||| |||||| |||| |||| | || | | |||||||
Sbjct 238 GACTTATGCTTTGGTGATCATTTACGGGGTCAACATTCTCTCTATGGGACCTGCGATGGT 297
Query 307 AACTTCTTCTTGTATGA-C--TTTCATGAAGGAGGCGGATGCGTGGT 350
||||||||||||||||| | ||||| ||||||||||||||| ||||
Sbjct 298 AACTTCTTCTTGTATGATCACTTTCACGAAGGAGGCGGATGCATGGT 344
Score = 67.6 bits (36), Expect = 3e-10
Identities = 36/36 (100%), Gaps = 0/36 (0%)
Strand=Plus/Plus
Query 425 ATGGTAGTAGACCCGAAAAGAGTTACAAGATTATTG 460
||||||||||||||||||||||||||||||||||||
Sbjct 340 ATGGTAGTAGACCCGAAAAGAGTTACAAGATTATTG 375
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56626214760
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5