BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925189
Length=1070
Score E
Sequences producing significant alignments: (Bits) Value
AT1G58090.1 | Symbols: | F-box and associated interaction doma... 481 7e-135
AT1G53325.1 | Symbols: | F-box associated ubiquitination effec... 385 6e-106
AT5G37040.1 | Symbols: | F-box family protein | chr5:14639135-... 272 5e-72
> AT1G58090.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr1:21510510-21511625 FORWARD LENGTH=1116
Length=1116
Score = 481 bits (260), Expect = 7e-135
Identities = 537/660 (81%), Gaps = 61/660 (9%)
Strand=Plus/Plus
Query 22 ATGGTGCCCAGAAAGCTTCCGTCAGATCTGGAAGAAGAGATACTCTTTCGAGTTCCGCCT 81
|||||| | | ||||||||| | ||||||||||||||||||||||||||||||||| |||
Sbjct 1 ATGGTGTCGAAAAAGCTTCCATTAGATCTGGAAGAAGAGATACTCTTTCGAGTTCCACCT 60
Query 82 CTATCTCTCCATT-GCTACAGATCTGTTTGCAAAGAATGGAACACTCTTTTCAACAATAA 140
| ||||||| || ||| |||||| ||||||| ||||||||||||||||||||| |||||
Sbjct 61 CGATCTCTCG-TTCGCTTCAGATCCGTTTGCAGAGAATGGAACACTCTTTTCAAGAATAA 119
Query 141 GAGATTCGTCCACAAAAACTTAGCTTGCGGTCC-CCAAGAATTCATGTTAAGGACACATT 199
||||||| || |||||||||| |||||||||| ||| ||| ||||||||| |||||||
Sbjct 120 GAGATTCATCAACAAAAACTTTGCTTGCGGTCGGCCA-GAAATCATGTTAAATACACATT 178
Query 200 CCCATATTTATTCGATAAGCATCGATCTCAACGACGA---TCCAACTATAAAGGTGCGTG 256
| |||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||
Sbjct 179 CACATATTTATTCGATAAGCGTCGATCTCAAAGACGAAAATCCAACTATAAAGGTGCGTG 238
Query 257 AT---CGCTTTGAGTTACCCG-GTAACCG---TTATCATCTCGAA-GGGACCTACGATGG 308
|| |||||||| | | || ||| ||||||||| | | |||| || ||||||
Sbjct 239 ATTTACGCTTTGA-TCATTTAAGTTGCCGCGGTTATCATCT-GTATGGGATCTGCGATGG 296
Query 309 TAACTTCTTCATGTAT-GACTTTCATAAAGGAGGC--AG-CGTGGTTTCGAACCCGTTGT 364
|||||||||||||||| | ||||| ||| |||||| || ||| |||| |||||||||||
Sbjct 297 TAACTTCTTCATGTATAG-CTTTCTTAATGGAGGCGGAGGCGTTGTTTGGAACCCGTTGT 355
Query 365 T--G-AGACAGACTAAATGGATTCCCGCGGATGAGATTATATGTAGCATGAGC-ATGGGT 420
| | |||||||||||||||||| || || ||||| || |||| ||| | || || |||
Sbjct 356 TTTGGAGACAGACTAAATGGATTGCCAAGGCTGAGAATACATGTGGCAAG-GCCATTGGT 414
Query 421 TACGATGGTAGTAGACCCGAAACGAGTTACA-GTATTATCGGTGATAATAGTTATAATAC 479
|||||||||||||||||||||| |||||||| | |||||||| | | ||| | |
Sbjct 415 TACGATGGTAGTAGACCCGAAAAGAGTTACAAG-ATTATCGG--A-AGGAGT-AG--T-- 465
Query 480 TGATCATTTGGC-GGGTAAAGTTACT-AGGAGAT-TTGCAGTCTTCGAATTTGCAACCAA 536
|| || || ||| ||||||||||||| | | || || ||||||||||||||||||||||
Sbjct 466 TGTTC-TT-GGCAGGGTAAAGTTACTGAT-ACATATT-CAGTCTTCGAATTTGCAACCAA 521
Query 537 TGCCTGGAAGATTACTAACCATACCAGTTTTCTC-AAGGAGTCACACTCAGAATTAATAG 595
||| |||||| ||||| | |||||| |||||| | || || | || |||||||| |
Sbjct 522 TGCGTGGAAGGTTACTGATCATACCCGTTTTCACGAAA-AG-C-CA----GAATTAAT-G 573
Query 596 TGTCCGA-TA-G-TAACAGGGTCTCCCTGAATGGAAATTTGTACTGGACTGCTTATAATT 652
| | || | | || ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 574 -GAC-GACTCCGGTA---GGGTCTCCCTGAATGGAAATTTGTACTGGACAGCTTATAATT 628
> AT1G53325.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr1:19895227-19895733 REVERSE LENGTH=507
Length=507
Score = 385 bits (208), Expect = 6e-106
Identities = 332/390 (85%), Gaps = 16/390 (4%)
Strand=Plus/Plus
Query 669 TACTCATACTCGTGGCCTCGCGATTTACAAGGGAGATCGGTTTTCAG-CATTAGAACAAT 727
||||||||||||| |||| | |||||||| |||||||||||||||| | | |||||||
Sbjct 126 TACTCATACTCGTATCCTCTCTATTTACAAAGGAGATCGGTTTTCAGTGA-TGGAACAAT 184
Query 728 GCACAATAACCAGAGAGATTGAGATTTGGGTGACAACGAATAAAATTGGTAATGGGGATG 787
||| || ||| || |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 185 GCAAAAGAACAAGGGAGATTGAGATTTGGGTGACAAAGAATAAAATTGGTAATGGGGATG 244
Query 788 ATGGAGACAATGTGGTGTGGATCAAGTTCATGACTGTCTCAATACCTAACTTCCC-ACTG 846
||||| || |||| |||||||| |||||||||||||||||||||||||||||||| | ||
Sbjct 245 ATGGAAACGATGTTGTGTGGATTAAGTTCATGACTGTCTCAATACCTAACTTCCCCA-TG 303
Query 847 GTTC---GTCACAACATGTCTTCAAGTTACTTCGTCGATAATAATATCTATGGAAAGAGC 903
|| | |||| || | ||| ||||||||||||||||| ||| ||||| ||| ||||||
Sbjct 304 GTACTTTGTCATAA--T-TCTACAAGTTACTTCGTCGATGATAGTATCTCTGGGAAGAGC 360
Query 904 TTCGTTATGTGTTAT-CTTAACGTGAAACCTAAACAAGCTTGGATCTATATTGTGAGGGG 962
|||||| | |||| | || | | ||||||||||||||||||| ||||||||||||||||
Sbjct 361 TTCGTTTTATGTTTTTCT-ACCAAGAAACCTAAACAAGCTTGGGTCTATATTGTGAGGGG 419
Query 963 AGATGTGTGCAAAAAGATTAAGGTTGATGAAGT-GCTATGTGA-GTTTTTATCCTATGTT 1020
|||| ||||||||||||||||| | |||||||| | ||||| | ||| ||||| ||
Sbjct 420 AGATCTGTGCAAAAAGATTAAGATAGATGAAGTTG-TATGT-ACGTTCCAATCCTGTGCC 477
Query 1021 TATGTTCCTAGTTTGATCACCATTTCTTGA 1050
|||||||| ||||||||| ||||| |||||
Sbjct 478 TATGTTCCCAGTTTGATCTCCATTCCTTGA 507
> AT5G37040.1 | Symbols: | F-box family protein | chr5:14639135-14639934
FORWARD LENGTH=729
Length=729
Score = 272 bits (147), Expect = 5e-72
Identities = 277/337 (82%), Gaps = 20/337 (6%)
Strand=Plus/Plus
Query 22 ATGGTGCCCAGAAAGCTTCCGTCAGATCTGGAAGAAGAGATACTCTTTCGAGTTCCGCCT 81
|||||||| | ||||||||| | ||||||||||||||||||||||||||||||||| |||
Sbjct 1 ATGGTGCCGAAAAAGCTTCCATTAGATCTGGAAGAAGAGATACTCTTTCGAGTTCCACCT 60
Query 82 CTATCTCTCCATTGCTACAGATCTGTTTGCAAAGAATGGAACACTCTTTTCA-ACAATAA 140
| |||||||||||||| ||||| |||||||||||||||||| |||||| || | | |||
Sbjct 61 CGATCTCTCCATTGCTTTAGATCCGTTTGCAAAGAATGGAACGCTCTTTCCAGAGA-TAA 119
Query 141 GAGATTCGTCCACAAAAACTTAGCTTGCGGTCC-CCAAGAATTCATGTTAAGGACACATT 199
|||||| || |||||||||| ||||||| ||| ||| |||||||| |||| ||||| ||
Sbjct 120 GAGATTAATCAACAAAAACTTTGCTTGCGCTCCTCCA-GAATTCATCTTAAAGACACGTT 178
Query 200 CCCATATTTATTCGATAAGCATCGATCTCAACGACGA---TCCAACTATAAAGGTGCGTG 256
|| ||||||||||||||||| || |||||||||| || |||||||||||| |||||||
Sbjct 179 CCAATATTTATTCGATAAGCGTCAATCTCAACGATGACAATCCAACTATAAATGTGCGTG 238
Query 257 A-TC--GCTTTGAGTTACCCGGTAACCGT-T-ATCAT-CTCGA-A-GGGACCTACGATGG 308
| | |||||| || | | || | | | | ||| ||| | ||||||| ||||||
Sbjct 239 ACTTATGCTTTG-GTGATCATTTA-CGGGGTCAACATTCTCTCTATGGGACCTGCGATGG 296
Query 309 TAACTTCTTCATGTATGA-C--TTTCATAAAGGAGGC 342
|||||||||| ||||||| | ||||| ||||||||
Sbjct 297 TAACTTCTTCTTGTATGATCACTTTCACGAAGGAGGC 333
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52409368980
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5