BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925199
Length=1195
Score E
Sequences producing significant alignments: (Bits) Value
AT3G25225.1 | Symbols: | pseudogene, hypothetical protein | ch... 102 7e-21
AT2G38590.1 | Symbols: | F-box and associated interaction doma... 75.0 2e-12
AT2G04730.1 | Symbols: | pseudogene, F-box protein-related, co... 60.2 4e-08
> AT3G25225.1 | Symbols: | pseudogene, hypothetical protein |
chr3:9184970-9186171 FORWARD LENGTH=1202
Length=1202
Score = 102 bits (55), Expect = 7e-21
Identities = 306/422 (73%), Gaps = 37/422 (9%)
Strand=Plus/Plus
Query 20 AATGAAGAACATGTCCAATCTTCCACA-AGACTTGGTAGAAGAGATACTCTCTAGAGTTC 78
||||| || || |||||||||||| | || |||| |||||| | |||| |||| |||
Sbjct 41 AATGACTAAGATATCCAATCTTCCA-AGGGATTTGGCGGAAGAGGTGCTCTGTAGAATTC 99
Query 79 CGTTGACATCTTTGAGAGC-GATGCGATCTACTTGTAAAAAGTGGAACAC-TCTATTTAA 136
||||||| ||| ||||| | | | ||||| |||| |||| ||||||||| | ||| ||
Sbjct 100 CGTTGACGTCTCTGAGAACTG-TTTGATCTTCTTGCAAAACGTGGAACACGT-TATCCAA 157
Query 137 AGATGAGAGGTTTACAAAGAAGCACATTGCCCAAGTTGCTGTAGAAACTACTAAGGAAAG 196
| ||||||| ||| |||||||| || ||| | || | | || | ||||||||
Sbjct 158 ATATGAGAGCTTTGCAAAGAAGTACCTTGGTGATCAAGCAAAATTAGCTGCAAAGGAAAG 217
Query 197 GGAGTTTGTGGCGATCATGTTGCTAAACTTTAGGGCTTATTTAATGAGAGTCAATC-TCC 255
|||||| || | || || || | || ||||||| ||| || ||||||||||||| ||
Sbjct 218 AGAGTTTATGATGGTCGTGATGATGAATTTTAGGGTTTAATTGATGAGAGTCAATCTTCA 277
Query 256 AAGGAATTCATAACAACTCTAATCCAT-TATTAAAGCCT-ATAGGTAAACTTATTAGCCT 313
|| || | || || || ||| || |||| | | | || |||||||||||| |
Sbjct 278 AAACAA--GGT-TGAA-TC--AT-CATGTA-TAAAACGTGA-AGCTAAACTTATTAGTTT 328
Query 314 AGACACTTCAGATCAAGTCAATATATCTCGGGTATTTCGA-TGCGAA-GGTTTATTGTTA 371
|| | ||| |||| ||||||||| || |||| | ||| || ||||||||||||
Sbjct 329 AG-----GC-GATGAAGTTGATATATCTCAAGTCTTTC-ACTGC-AACGGTTTATTGTTA 380
Query 372 TGCA-C--CA-CA--AAAGACTACACTAGGCTAGTAGTTTGGAATCCGTAT--TT-GGGA 422
| || | || || |||||| | ||||||||||| |||||||| |||||| || ||||
Sbjct 381 TTCATCAGCATCACCAAAGACAAGACTAGGCTAGTGGTTTGGAACCCGTATGATTGGGGA 440
Query 423 CA 424
||
Sbjct 441 CA 442
> AT2G38590.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr2:16142897-16144184 FORWARD LENGTH=1288
Length=1288
Score = 75.0 bits (40), Expect = 2e-12
Identities = 56/64 (88%), Gaps = 0/64 (0%)
Strand=Plus/Plus
Query 570 GAAATCTACGAATTAAACTCTAATTCATGGAGGGTTCTTGATGTCACTCCACACTGGTGT 629
||||| ||||| || |||||| ||||||||| |||||||||||||||||||||||||
Sbjct 577 GAAATTTACGATTTTAACTCTGATTCATGGACAACTCTTGATGTCACTCCACACTGGTGT 636
Query 630 ATAT 633
||||
Sbjct 637 ATAT 640
> AT2G04730.1 | Symbols: | pseudogene, F-box protein-related,
contains TIGRFAM TIGR01640 : F-box protein interaction domain;
similar to F-box protein family, AtFBX9 (GI:20197985) (Arabidopsis
thaliana) | chr2:1654500-1655699 REVERSE LENGTH=1200
Length=1200
Score = 60.2 bits (32), Expect = 4e-08
Identities = 54/65 (83%), Gaps = 0/65 (0%)
Strand=Plus/Plus
Query 570 GAAATCTACGAATTAAACTCTAATTCATGGAGGGTTCTTGATGTCACTCCACACTGGTGT 629
|||||||| || || | ||| || ||||| | |||||||||||||||||||||||||
Sbjct 539 GAAATCTATGATTTCGAGTCTGGTTTATGGACGACTCTTGATGTCACTCCACACTGGTGT 598
Query 630 ATATC 634
|||||
Sbjct 599 ATATC 603
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58684437105
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5