BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg925203 Length=710 Score E Sequences producing significant alignments: (Bits) Value AT3G53690.1 | Symbols: | RING/U-box superfamily protein | chr3... 610 6e-174 AT2G26455.1 | Symbols: | pseudogene, similar to Ubiquitin conj... 459 2e-128 AT4G24470.3 | Symbols: TIFY1 | GATA-type zinc finger protein wi... 102 4e-21 > AT3G53690.1 | Symbols: | RING/U-box superfamily protein | chr3:19898788-19900065 REVERSE LENGTH=1193 Length=1193 Score = 610 bits (330), Expect = 6e-174 Identities = 442/494 (89%), Gaps = 16/494 (3%) Strand=Plus/Plus Query 75 CTTCTACTGCAACGATTGTGTCTCGAAATATATAGCTGCAAAATTACAAGACAACATCCT 134 ||||||||||||||| ||||| |||||||||||||| || ||||||||||||||||| || Sbjct 426 CTTCTACTGCAACGACTGTGTTTCGAAATATATAGCAGCTAAATTACAAGACAACATTCT 485 Query 135 CTCAATCGAGTGTCTTGTCTCTGGTTGCAAGAGCTCTGGTCGGCTCGAGCCAGATAAGTG 194 ||||||||| |||| ||||||||||| | ||||||||||||||||||||| |||| Sbjct 486 CTCAATCGAATGTCCTGTCTCTGGTT------GTTCTGGTCGGCTCGAGCCAGATCAGTG 539 Query 195 TCGTCAAATCTTGCC-AAGAGAGGTTTTTGATCAGTGGGATGATGCTCTT-TCTGAAGCA 252 |||||| || ||||| || |||||||||||||| ||||| ||||||| || | ||||||| Sbjct 540 TCGTCAGATTTTGCCTAA-AGAGGTTTTTGATCGGTGGGGTGATGCT-TTGTGTGAAGCA 597 Query 253 GTATTGATGCGTTCAAAGAGATTATATTGTCCTTATAAGGATTGCTCTGCTTTGCTTTTC 312 ||| |||||||||| |||| ||| || |||||||| |||||||||||||||||| ||||| Sbjct 598 GTAGTGATGCGTTCGAAGAAATTCTACTGTCCTTACAAGGATTGCTCTGCTTTGGTTTTC 657 Query 313 ATT-GACA-AGAGTGAAGTGAAGATGAAAGATTCGGAGTGTCCTCATTGCCATAGAATGG 370 || || | |||||||||| ||||||||||||||||||||||||||||| |||||||||| Sbjct 658 -TTAGA-AGAGAGTGAAGTAAAGATGAAAGATTCGGAGTGTCCTCATTGTCATAGAATGG 715 Query 371 TGTGTGTAGAGTGTGGGACTAAGTGGCATCCGGAGATAACTTGCGAGGAGTTTCAGAAGC 430 ||||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||| Sbjct 716 TGTGTGTGGAGTGTGGGACTCAGTGGCATCCGGAGATGACTTGCGAGGAGTTTCAGAAGC 775 Query 431 TAGCAGG-GAACGAAAGAGGAAGAGATAATATTTTGCTCGCGACGATGGCAAAGAAAAAG 489 |||| || |||||| |||||||||||| |||||||||| ||||||||||||||| ||||| Sbjct 776 TAGC-GGCGAACGAGAGAGGAAGAGATGATATTTTGCTTGCGACGATGGCAAAGCAAAAG 834 Query 490 AACTGGAAAAGATGTTATTCTTGCAAACTCTATATTGAGAAGTCTCAGGGTTGCTTATAC 549 || |||||||||||| |||||||||| ||||||||||||| |||||||||||||||||| Sbjct 835 AAATGGAAAAGATGTCCTTCTTGCAAATTCTATATTGAGAAATCTCAGGGTTGCTTATAC 894 Query 550 ATGAAATGCAGGTG 563 ||||| |||||||| Sbjct 895 ATGAAGTGCAGGTG 908 > AT2G26455.1 | Symbols: | pseudogene, similar to Ubiquitin conjugating enzyme 7 interacting protein 4 (UbcM4- interacting protein 4) (RING finger protein 144). (Mouse), contains a Prosite:PS00518: Zinc finger, C3HC4 type (RING finger), signature and Pfam:PF01485 IBR domain; blastp match of 25% identity and 5.7e-18 P-value to SP|Q925F3|U7I4_MOUSE Ubiquitin conjugating enzyme 7 interacting protein 4 (UbcM4- interacting protein 4) (RING finger protein 144). (Mouse) {Mus musculus} | chr2:11253700-11254930 REVERSE LENGTH=1231 Length=1231 Score = 459 bits (248), Expect = 2e-128 Identities = 414/491 (84%), Gaps = 23/491 (5%) Strand=Plus/Plus Query 82 TGCAACGATTGTGTCTCGAAATATATAGCTGCAAAATTACAAGACAACATCCTCTCAATC 141 ||||||||||||||||| |||||||||||||| || |||||||||||||| ||||||||| Sbjct 532 TGCAACGATTGTGTCTCAAAATATATAGCTGCTAAGTTACAAGACAACATTCTCTCAATC 591 Query 142 GAGTGTCTTGTCTCTGGTTGCAAGAGCTCTGGTCGGCTCGAGCCAGATAAGTGTC-GTCA 200 | || | ||| ||||||| |||| || | ||||||||| ||||| || | |||| Sbjct 592 AAATGCCCTGTTTCTGGTT------GCTCGGGGCAGCTCGAGCCCGATAAATG-CGGTCA 644 Query 201 AATCTTGCCAAGAGAGGTTTTTGATCAGT-GGGATGATGCTCTTT-CTGAAGCAGT-ATT 257 |||| |||||||||| || ||||||| || |||| || ||||||| | || || || ||| Sbjct 645 AATCCTGCCAAGAGAAGTCTTTGATCGGTGGGGA-GACGCTCTTTGC-GAGGCGGTGATT 702 Query 258 GATGCGTTCAAAGAGATTATATTGTCCTTATAAGGATTGCTCTGCTTTGCTTTTCATT-G 316 ||| ||||||||||||| |||||||||||||||||||||||||||||||| ||| || | Sbjct 703 -ATGAGTTCAAAGAGATTCTATTGTCCTTATAAGGATTGCTCTGCTTTGCTCTTC-TTGG 760 Query 317 ACAAGAGT---GAAGTGAAGATGAAAGAT-TCGGAGTGTCCTCATTGCCATAGAATGGTG 372 || ||||| |||| ||||||||| | | |||||||||||||||||||||||||||||| Sbjct 761 ACGAGAGTGAAGAAGAGAAGATGAATG-TATCGGAGTGTCCTCATTGCCATAGAATGGTG 819 Query 373 TGTGTAGAGTGTGGGACTAAGTGGCATCCGGAGATAACTTGCGAGGAGTTTCAGAAGCTA 432 ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| Sbjct 820 AGTGTAGAGTGTGGGACTAAGTGGCATCCGGAGATAACATGCGAGGAGTTTCAAAAGCTA 879 Query 433 GCAGGGAACGAAAGAGGAAGAGATAATATTTTGCTCGC-GACGATGGCAAAGAAAAAGAA 491 || | ||||||||||| ||||| |||| ||| | | || |||||| ||| ||||| Sbjct 880 GCCGAGAACGAAAGAGAAAGAGGGGATATATTGTT-GAAGAATATGGCAGAGAGTAAGAA 938 Query 492 CTGGAAAAGATGTTATTCTTGCAAACTCTATATTGAGAAGTCTCAGGGTTGCTTATACAT 551 |||| ||||||| |||||||||| |||| ||||| || ||| |||||||||||||||| Sbjct 939 GTGGAGAAGATGTCCTTCTTGCAAATTCTACATTGAAAAATCTGAGGGTTGCTTATACAT 998 Query 552 GAAATGCAGGT 562 ||| ||||||| Sbjct 999 GAAGTGCAGGT 1009 > AT4G24470.3 | Symbols: TIFY1 | GATA-type zinc finger protein with TIFY domain | chr4:12645564-12647864 FORWARD LENGTH=1305 Length=1305 Score = 102 bits (55), Expect = 4e-21 Identities = 57/58 (98%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 559 AGGTGGATGCTGTGTTGTCGTTGTTGGGTGGTTCTACTGAGCTTGCTCCTGGTCCGCA 616 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 526 AGGTGGATGCTGTGTTGTCGCTGTTGGGTGGTTCTACTGAGCTTGCTCCTGGTCCGCA 583 Score = 78.7 bits (42), Expect = 7e-14 Identities = 48/51 (94%), Gaps = 0/51 (0%) Strand=Plus/Plus Query 618 ATGTTTCGAGAAGAAAGTAAGATACGGTGTTTGCCAAGAAATGGCCTTAAG 668 ||||||||||||||||||||||||||||||| |||||||| | |||||||| Sbjct 701 ATGTTTCGAGAAGAAAGTAAGATACGGTGTTCGCCAAGAAGTTGCCTTAAG 751 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 34410390695 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5