BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925203
Length=710
Score E
Sequences producing significant alignments: (Bits) Value
AT3G53690.1 | Symbols: | RING/U-box superfamily protein | chr3... 610 6e-174
AT2G26455.1 | Symbols: | pseudogene, similar to Ubiquitin conj... 459 2e-128
AT4G24470.3 | Symbols: TIFY1 | GATA-type zinc finger protein wi... 102 4e-21
> AT3G53690.1 | Symbols: | RING/U-box superfamily protein | chr3:19898788-19900065
REVERSE LENGTH=1193
Length=1193
Score = 610 bits (330), Expect = 6e-174
Identities = 442/494 (89%), Gaps = 16/494 (3%)
Strand=Plus/Plus
Query 75 CTTCTACTGCAACGATTGTGTCTCGAAATATATAGCTGCAAAATTACAAGACAACATCCT 134
||||||||||||||| ||||| |||||||||||||| || ||||||||||||||||| ||
Sbjct 426 CTTCTACTGCAACGACTGTGTTTCGAAATATATAGCAGCTAAATTACAAGACAACATTCT 485
Query 135 CTCAATCGAGTGTCTTGTCTCTGGTTGCAAGAGCTCTGGTCGGCTCGAGCCAGATAAGTG 194
||||||||| |||| ||||||||||| | ||||||||||||||||||||| ||||
Sbjct 486 CTCAATCGAATGTCCTGTCTCTGGTT------GTTCTGGTCGGCTCGAGCCAGATCAGTG 539
Query 195 TCGTCAAATCTTGCC-AAGAGAGGTTTTTGATCAGTGGGATGATGCTCTT-TCTGAAGCA 252
|||||| || ||||| || |||||||||||||| ||||| ||||||| || | |||||||
Sbjct 540 TCGTCAGATTTTGCCTAA-AGAGGTTTTTGATCGGTGGGGTGATGCT-TTGTGTGAAGCA 597
Query 253 GTATTGATGCGTTCAAAGAGATTATATTGTCCTTATAAGGATTGCTCTGCTTTGCTTTTC 312
||| |||||||||| |||| ||| || |||||||| |||||||||||||||||| |||||
Sbjct 598 GTAGTGATGCGTTCGAAGAAATTCTACTGTCCTTACAAGGATTGCTCTGCTTTGGTTTTC 657
Query 313 ATT-GACA-AGAGTGAAGTGAAGATGAAAGATTCGGAGTGTCCTCATTGCCATAGAATGG 370
|| || | |||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 658 -TTAGA-AGAGAGTGAAGTAAAGATGAAAGATTCGGAGTGTCCTCATTGTCATAGAATGG 715
Query 371 TGTGTGTAGAGTGTGGGACTAAGTGGCATCCGGAGATAACTTGCGAGGAGTTTCAGAAGC 430
||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 716 TGTGTGTGGAGTGTGGGACTCAGTGGCATCCGGAGATGACTTGCGAGGAGTTTCAGAAGC 775
Query 431 TAGCAGG-GAACGAAAGAGGAAGAGATAATATTTTGCTCGCGACGATGGCAAAGAAAAAG 489
|||| || |||||| |||||||||||| |||||||||| ||||||||||||||| |||||
Sbjct 776 TAGC-GGCGAACGAGAGAGGAAGAGATGATATTTTGCTTGCGACGATGGCAAAGCAAAAG 834
Query 490 AACTGGAAAAGATGTTATTCTTGCAAACTCTATATTGAGAAGTCTCAGGGTTGCTTATAC 549
|| |||||||||||| |||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 835 AAATGGAAAAGATGTCCTTCTTGCAAATTCTATATTGAGAAATCTCAGGGTTGCTTATAC 894
Query 550 ATGAAATGCAGGTG 563
||||| ||||||||
Sbjct 895 ATGAAGTGCAGGTG 908
> AT2G26455.1 | Symbols: | pseudogene, similar to Ubiquitin conjugating
enzyme 7 interacting protein 4 (UbcM4- interacting
protein 4) (RING finger protein 144). (Mouse), contains a Prosite:PS00518:
Zinc finger, C3HC4 type (RING finger), signature
and Pfam:PF01485 IBR domain; blastp match of 25% identity
and 5.7e-18 P-value to SP|Q925F3|U7I4_MOUSE Ubiquitin conjugating
enzyme 7 interacting protein 4 (UbcM4- interacting
protein 4) (RING finger protein 144). (Mouse) {Mus musculus}
| chr2:11253700-11254930 REVERSE LENGTH=1231
Length=1231
Score = 459 bits (248), Expect = 2e-128
Identities = 414/491 (84%), Gaps = 23/491 (5%)
Strand=Plus/Plus
Query 82 TGCAACGATTGTGTCTCGAAATATATAGCTGCAAAATTACAAGACAACATCCTCTCAATC 141
||||||||||||||||| |||||||||||||| || |||||||||||||| |||||||||
Sbjct 532 TGCAACGATTGTGTCTCAAAATATATAGCTGCTAAGTTACAAGACAACATTCTCTCAATC 591
Query 142 GAGTGTCTTGTCTCTGGTTGCAAGAGCTCTGGTCGGCTCGAGCCAGATAAGTGTC-GTCA 200
| || | ||| ||||||| |||| || | ||||||||| ||||| || | ||||
Sbjct 592 AAATGCCCTGTTTCTGGTT------GCTCGGGGCAGCTCGAGCCCGATAAATG-CGGTCA 644
Query 201 AATCTTGCCAAGAGAGGTTTTTGATCAGT-GGGATGATGCTCTTT-CTGAAGCAGT-ATT 257
|||| |||||||||| || ||||||| || |||| || ||||||| | || || || |||
Sbjct 645 AATCCTGCCAAGAGAAGTCTTTGATCGGTGGGGA-GACGCTCTTTGC-GAGGCGGTGATT 702
Query 258 GATGCGTTCAAAGAGATTATATTGTCCTTATAAGGATTGCTCTGCTTTGCTTTTCATT-G 316
||| ||||||||||||| |||||||||||||||||||||||||||||||| ||| || |
Sbjct 703 -ATGAGTTCAAAGAGATTCTATTGTCCTTATAAGGATTGCTCTGCTTTGCTCTTC-TTGG 760
Query 317 ACAAGAGT---GAAGTGAAGATGAAAGAT-TCGGAGTGTCCTCATTGCCATAGAATGGTG 372
|| ||||| |||| ||||||||| | | ||||||||||||||||||||||||||||||
Sbjct 761 ACGAGAGTGAAGAAGAGAAGATGAATG-TATCGGAGTGTCCTCATTGCCATAGAATGGTG 819
Query 373 TGTGTAGAGTGTGGGACTAAGTGGCATCCGGAGATAACTTGCGAGGAGTTTCAGAAGCTA 432
||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 820 AGTGTAGAGTGTGGGACTAAGTGGCATCCGGAGATAACATGCGAGGAGTTTCAAAAGCTA 879
Query 433 GCAGGGAACGAAAGAGGAAGAGATAATATTTTGCTCGC-GACGATGGCAAAGAAAAAGAA 491
|| | ||||||||||| ||||| |||| ||| | | || |||||| ||| |||||
Sbjct 880 GCCGAGAACGAAAGAGAAAGAGGGGATATATTGTT-GAAGAATATGGCAGAGAGTAAGAA 938
Query 492 CTGGAAAAGATGTTATTCTTGCAAACTCTATATTGAGAAGTCTCAGGGTTGCTTATACAT 551
|||| ||||||| |||||||||| |||| ||||| || ||| ||||||||||||||||
Sbjct 939 GTGGAGAAGATGTCCTTCTTGCAAATTCTACATTGAAAAATCTGAGGGTTGCTTATACAT 998
Query 552 GAAATGCAGGT 562
||| |||||||
Sbjct 999 GAAGTGCAGGT 1009
> AT4G24470.3 | Symbols: TIFY1 | GATA-type zinc finger protein
with TIFY domain | chr4:12645564-12647864 FORWARD LENGTH=1305
Length=1305
Score = 102 bits (55), Expect = 4e-21
Identities = 57/58 (98%), Gaps = 0/58 (0%)
Strand=Plus/Plus
Query 559 AGGTGGATGCTGTGTTGTCGTTGTTGGGTGGTTCTACTGAGCTTGCTCCTGGTCCGCA 616
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 526 AGGTGGATGCTGTGTTGTCGCTGTTGGGTGGTTCTACTGAGCTTGCTCCTGGTCCGCA 583
Score = 78.7 bits (42), Expect = 7e-14
Identities = 48/51 (94%), Gaps = 0/51 (0%)
Strand=Plus/Plus
Query 618 ATGTTTCGAGAAGAAAGTAAGATACGGTGTTTGCCAAGAAATGGCCTTAAG 668
||||||||||||||||||||||||||||||| |||||||| | ||||||||
Sbjct 701 ATGTTTCGAGAAGAAAGTAAGATACGGTGTTCGCCAAGAAGTTGCCTTAAG 751
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34410390695
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5