BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925210
Length=313
Score E
Sequences producing significant alignments: (Bits) Value
AT5G36805.1 | Symbols: | Plant thionin family protein | chr5:1... 270 5e-72
AT5G36720.1 | Symbols: | Plant thionin family protein | chr5:1... 270 5e-72
AT5G34828.1 | Symbols: | Plant thionin family protein | chr5:1... 257 4e-68
AT5G38378.1 | Symbols: | Plant thionin family protein | chr5:1... 257 4e-68
AT3G24465.1 | Symbols: | Plant thionin family protein | chr3:8... 257 4e-68
> AT5G36805.1 | Symbols: | Plant thionin family protein | chr5:14488961-14489224
REVERSE LENGTH=264
Length=264
Score = 270 bits (146), Expect = 5e-72
Identities = 231/270 (86%), Gaps = 13/270 (5%)
Strand=Plus/Plus
Query 21 ATGGCGACTCAAGCAATGAAAAATATATACAGTTG-TTTGATGATTGTAGTTTTATTTAT 79
||||| |||||| |||| ||||| |||||||| || ||||||||||||||||||||| |
Sbjct 1 ATGGCAACTCAAACAATAAAAAAGATATACAG-TGTTTTGATGATTGTAGTTTTATTAAC 59
Query 80 GATGATGGTTTTAACATATGCGAGTACGGTGGAAGTGTGTGTTAAGCATTGTGTCCCGAA 139
|||||| |||| |||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 60 GATGATTGTTTCAACATACGCGAGTACGGTGGAAGTATGTGTTAAGCATTGTGTCCCGAA 119
Query 140 TCAGTGCATGAAAGTTTCTCAAAAGGCAACTCTTCCTTTATGTGAGAATGCTTGCAAAAA 199
||| |||||||||||||||||||||||||||||||| |||||||||| |||||||| |||
Sbjct 120 TCAATGCATGAAAGTTTCTCAAAAGGCAACTCTTCCATTATGTGAGACTGCTTGCACAAA 179
Query 200 ATTCTGCAACCAAAACAAATTTTCTCATGACAAACACATCGTGCCTCGAAGTT-CTTGCG 258
| ||||||| |||||||| | |||| || | ||||||||||||||| || ||
Sbjct 180 ACTCTGCAATGAAAACAAA----C--ATGAGGAATATGTCGTGCCTCGAAGTTACT-GCA 232
Query 259 ACGGATTATTCAGCTGGTTACTATGTAATA 288
| ||||||||| ||||| |||||| |||
Sbjct 233 ATGGATTATTC---TGGTTTCTATGTGATA 259
> AT5G36720.1 | Symbols: | Plant thionin family protein | chr5:14429661-14429924
REVERSE LENGTH=264
Length=264
Score = 270 bits (146), Expect = 5e-72
Identities = 231/270 (86%), Gaps = 13/270 (5%)
Strand=Plus/Plus
Query 21 ATGGCGACTCAAGCAATGAAAAATATATACAGTTG-TTTGATGATTGTAGTTTTATTTAT 79
||||| |||||| |||| ||||| |||||||| || ||||||||||||||||||||| |
Sbjct 1 ATGGCAACTCAAACAATAAAAAAGATATACAG-TGTTTTGATGATTGTAGTTTTATTAAC 59
Query 80 GATGATGGTTTTAACATATGCGAGTACGGTGGAAGTGTGTGTTAAGCATTGTGTCCCGAA 139
|||||| |||| |||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 60 GATGATTGTTTCAACATACGCGAGTACGGTGGAAGTATGTGTTAAGCATTGTGTCCCGAA 119
Query 140 TCAGTGCATGAAAGTTTCTCAAAAGGCAACTCTTCCTTTATGTGAGAATGCTTGCAAAAA 199
||| |||||||||||||||||||||||||||||||| |||||||||| |||||||| |||
Sbjct 120 TCAATGCATGAAAGTTTCTCAAAAGGCAACTCTTCCATTATGTGAGACTGCTTGCACAAA 179
Query 200 ATTCTGCAACCAAAACAAATTTTCTCATGACAAACACATCGTGCCTCGAAGTT-CTTGCG 258
| ||||||| |||||||| | |||| || | ||||||||||||||| || ||
Sbjct 180 ACTCTGCAATGAAAACAAA----C--ATGAGGAATATGTCGTGCCTCGAAGTTACT-GCA 232
Query 259 ACGGATTATTCAGCTGGTTACTATGTAATA 288
| ||||||||| ||||| |||||| |||
Sbjct 233 ATGGATTATTC---TGGTTTCTATGTGATA 259
> AT5G34828.1 | Symbols: | Plant thionin family protein | chr5:13094069-13094344
REVERSE LENGTH=276
Length=276
Score = 257 bits (139), Expect = 4e-68
Identities = 187/210 (89%), Gaps = 4/210 (2%)
Strand=Plus/Plus
Query 21 ATGGCGACTCAAGCAATGAAAAATATATACAGTTG-TTTGATGATTGTAGTTTTATTTAT 79
|||||||||||| |||| ||||| |||||||| || |||||| ||||||| ||||||||
Sbjct 1 ATGGCGACTCAAACAATAAAAAAGATATACAG-TGTTTTGATCATTGTAGCTTTATTTAC 59
Query 80 GATGATGGTTTTAACATATGCGAGTACGGTGGAAGTGTGTGTTAAGCATTGTGTCCCGAA 139
||||||||||| ||||| |||||||||| | ||| | |||||||| ||||||||||| ||
Sbjct 60 GATGATGGTTTCAACATTTGCGAGTACGATAGAAATATGTGTTAAACATTGTGTCCCAAA 119
Query 140 TCAGTGCATGAAAGT-TTCTCAAAAGGCAACTCTTCCTTTATGTGAGAATGCTTGCAAAA 198
||||||||| ||||| || | |||||||||||||||||||||||||||||||||||||||
Sbjct 120 TCAGTGCATAAAAGTGTT-TAAAAAGGCAACTCTTCCTTTATGTGAGAATGCTTGCAAAA 178
Query 199 AATTCTGCAACCAAAACAAATTTTCTCATG 228
|| |||||||||| ||||||||| ||||||
Sbjct 179 AACTCTGCAACCAGAACAAATTTGCTCATG 208
> AT5G38378.1 | Symbols: | Plant thionin family protein | chr5:15344448-15344711
FORWARD LENGTH=264
Length=264
Score = 257 bits (139), Expect = 4e-68
Identities = 233/276 (84%), Gaps = 15/276 (5%)
Strand=Plus/Plus
Query 21 ATGGCGACTCAAGCAATGAAAAATATATACAGTTG-TTTGATGATTGTAGTTTTATTTAT 79
||||| |||||| |||| ||||| |||||||| || |||||||||||||||||||||||
Sbjct 1 ATGGCAACTCAAACAATAAAAAAGATATACAG-TGTTTTGATGATTGTAGTTTTATTTAC 59
Query 80 GATGATGGTTTTAAC-ATATGCGAGTACGGTGGAAGTGTGTGTTAAGCATTGTGTCCCGA 138
||||||||||| ||| | | ||||||||||||||||||||||||||||||||||||||||
Sbjct 60 GATGATGGTTTCAACCA-ACGCGAGTACGGTGGAAGTGTGTGTTAAGCATTGTGTCCCGA 118
Query 139 ATCAGTGCATGAAAGTTTCTCAAAAGGCAACTCTTCCTTTATGTGAGAATGCTTGCAAAA 198
| || ||||||||||||||||| |||||||||||||| |||||||||| |||||||| ||
Sbjct 119 ACCAATGCATGAAAGTTTCTCAGAAGGCAACTCTTCCATTATGTGAGACTGCTTGCACAA 178
Query 199 AATTCTGCAACCAAAACAAATTTTCTCATGACAAACACATCGTGCCTCGAAGTT-CTTGC 257
|| ||||||| |||||||| | |||| || | |||||||||| |||| || |
Sbjct 179 AACTCTGCAATGAAAACAAA----C--ATGAGGAATATGTCGTGCCTCGGAGTTACT-GT 231
Query 258 GACGGATTATTCAGCTGGTTACTATGTAATAAGTGA 293
|| |||||||| ||||| |||||| |||| |||
Sbjct 232 GAGGGATTATTT---TGGTTTCTATGTGATAATTGA 264
> AT3G24465.1 | Symbols: | Plant thionin family protein | chr3:8894877-8895140
REVERSE LENGTH=264
Length=264
Score = 257 bits (139), Expect = 4e-68
Identities = 233/276 (84%), Gaps = 15/276 (5%)
Strand=Plus/Plus
Query 21 ATGGCGACTCAAGCAATGAAAAATATATACAGTTG-TTTGATGATTGTAGTTTTATTTAT 79
||||| |||||| ||| ||||| |||||||| || |||||||||||||||||||||||
Sbjct 1 ATGGCAACTCAAACAACAAAAAAGATATACAG-TGTTTTGATGATTGTAGTTTTATTTAC 59
Query 80 GATGATGGTTTTAACATATGCGAGTACGGTGGAAGTGTGTGTTAAGCATTGTGTCCCGAA 139
|||||| |||| |||||| ||||||||| |||||||||||||||| || ||| |||||||
Sbjct 60 GATGATTGTTTCAACATACGCGAGTACGATGGAAGTGTGTGTTAAACACTGTATCCCGAA 119
Query 140 TCAGTGCATGAAAGTTTCTCAAAAGGCAACTCTTCCTTTATGTGAGAATGCTTGCAAAAA 199
||| |||||||||||||||||||||||||||||||| |||||||||| |||||||| |||
Sbjct 120 TCAATGCATGAAAGTTTCTCAAAAGGCAACTCTTCCATTATGTGAGACTGCTTGCACAAA 179
Query 200 A-TTCTGCAACCAAAACAAATTTTCTCATGACAAACACATCGTGCCTCGAAGTT-CTTGC 257
| || ||||| |||||||| |||| ||| | |||||||||||||| | || ||
Sbjct 180 ACTT-TGCAATGAAAACAAAG------ATGAGAAATATATCGTGCCTCGAAGCTACT-GC 231
Query 258 GACGGATTATTCAGCTGGTTACTATGTAATAAGTGA 293
|| ||||||||| ||||| |||||| |||| |||
Sbjct 232 GATGGATTATTC---TGGTTTCTATGTGATAACTGA 264
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 14527379461
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5