BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925211
Length=316
Score E
Sequences producing significant alignments: (Bits) Value
AT5G34828.1 | Symbols: | Plant thionin family protein | chr5:1... 350 6e-96
AT5G38378.1 | Symbols: | Plant thionin family protein | chr5:1... 261 3e-69
AT1G58245.1 | Symbols: | Plant thionin family protein | chr1:2... 252 2e-66
AT3G24465.1 | Symbols: | Plant thionin family protein | chr3:8... 244 3e-64
> AT5G34828.1 | Symbols: | Plant thionin family protein | chr5:13094069-13094344
REVERSE LENGTH=276
Length=276
Score = 350 bits (189), Expect = 6e-96
Identities = 249/278 (90%), Gaps = 4/278 (1%)
Strand=Plus/Plus
Query 21 ATGGCGACTCAAGCAATGAAAAAGATATACAGTATTTTGATGATTGTAGTTTTATTTACG 80
|||||||||||| |||| ||||||||||||||| ||||||| ||||||| ||||||||||
Sbjct 1 ATGGCGACTCAAACAATAAAAAAGATATACAGTGTTTTGATCATTGTAGCTTTATTTACG 60
Query 81 ATGATGGTTTCAACATACGCGAATACAG-TGGAAGTGTGTGTTAAGCATTGTGTCCCGAA 139
|||||||||||||||| |||| ||| | | ||| | |||||||| ||||||||||| ||
Sbjct 61 ATGATGGTTTCAACATTTGCGAGTAC-GATAGAAATATGTGTTAAACATTGTGTCCCAAA 119
Query 140 TCAGTGCATGAAAGT-TTCTAAAAAGGCAACTATTCCTTTATGTGAGAATGCTTGCAAAA 198
||||||||| ||||| || ||||||||||||| |||||||||||||||||||||||||||
Sbjct 120 TCAGTGCATAAAAGTGTT-TAAAAAGGCAACTCTTCCTTTATGTGAGAATGCTTGCAAAA 178
Query 199 AGCTCTGCAACCAAAACAAATTTTCTGATGAGAAATTCTACGCCATGCCTCCTGGAGACT 258
| ||||||||||| ||||||||| || ||| |||||||||| ||||||||||| |||||
Sbjct 179 AACTCTGCAACCAGAACAAATTTGCTCATGTGAAATTCTACTCCATGCCTCCTCAAGACT 238
Query 259 TATGCGAGGGATTTTTTGGGTTACTATGTAATAACTGA 296
| ||||||||||||||||| ||||||||||||||||||
Sbjct 239 TGTGCGAGGGATTTTTTGGTTTACTATGTAATAACTGA 276
> AT5G38378.1 | Symbols: | Plant thionin family protein | chr5:15344448-15344711
FORWARD LENGTH=264
Length=264
Score = 261 bits (141), Expect = 3e-69
Identities = 181/200 (91%), Gaps = 4/200 (2%)
Strand=Plus/Plus
Query 21 ATGGCGACTCAAGCAATGAAAAAGATATACAGTATTTTGATGATTGTAGTTTTATTTACG 80
||||| |||||| |||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1 ATGGCAACTCAAACAATAAAAAAGATATACAGTGTTTTGATGATTGTAGTTTTATTTACG 60
Query 81 ATGATGGTTTCAAC-ATACGCGAATACAGTGGAAGTGTGTGTTAAGCATTGTGTCCCGAA 139
|||||||||||||| | |||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 61 ATGATGGTTTCAACCA-ACGCGAGTACGGTGGAAGTGTGTGTTAAGCATTGTGTCCCGAA 119
Query 140 TCAGTGCATGAAAGTTTCTAAAAAGGCAACTATTCCTTTATGTGAGAATGCTTGCA-AAA 198
|| ||||||||||||||| | ||||||||| |||| |||||||||| |||||||| |||
Sbjct 120 CCAATGCATGAAAGTTTCTCAGAAGGCAACTCTTCCATTATGTGAGACTGCTTGCACAAA 179
Query 199 AGCTCTGCAACCAAAACAAA 218
| |||||||| ||||||||
Sbjct 180 A-CTCTGCAATGAAAACAAA 198
> AT1G58245.1 | Symbols: | Plant thionin family protein | chr1:21584252-21584524
REVERSE LENGTH=273
Length=273
Score = 252 bits (136), Expect = 2e-66
Identities = 179/200 (90%), Gaps = 2/200 (1%)
Strand=Plus/Plus
Query 36 ATGAAAAAGATATACAGTA-TTTTGATGATTGTAGTTTTATTTACGATGATGGTTTCAAC 94
||||||||||||| ||| | |||||||||| |||||||||||||||||||||||||||||
Sbjct 1 ATGAAAAAGATATGCAG-AGTTTTGATGATAGTAGTTTTATTTACGATGATGGTTTCAAC 59
Query 95 ATACGCGAATACAGTGGAAGTGTGTGTTAAGCATTGTGTCCCGAATCAGTGCATGAAAGT 154
||| |||| |||| |||||||||||||||| ||||||||||| ||||| |||||||||||
Sbjct 60 ATATGCGAGTACACTGGAAGTGTGTGTTAAACATTGTGTCCCAAATCAATGCATGAAAGT 119
Query 155 TTCTAAAAAGGCAACTATTCCTTTATGTGAGAATGCTTGCAAAAAGCTCTGCAACCAAAA 214
|||| ||||||||||| | ||||| ||||| ||||| |||||||| |||||||| ||||
Sbjct 120 TTCTGAAAAGGCAACTCTACCTTTGTGTGAAAATGCATGCAAAAAACTCTGCAATGAAAA 179
Query 215 CAAATTTTCTGATGAGAAAT 234
||| |||||| |||||||||
Sbjct 180 CAAGTTTTCTCATGAGAAAT 199
> AT3G24465.1 | Symbols: | Plant thionin family protein | chr3:8894877-8895140
REVERSE LENGTH=264
Length=264
Score = 244 bits (132), Expect = 3e-64
Identities = 178/200 (89%), Gaps = 4/200 (2%)
Strand=Plus/Plus
Query 21 ATGGCGACTCAAGCAATGAAAAAGATATACAGTATTTTGATGATTGTAGTTTTATTTACG 80
||||| |||||| ||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1 ATGGCAACTCAAACAACAAAAAAGATATACAGTGTTTTGATGATTGTAGTTTTATTTACG 60
Query 81 ATGATGGTTTCAACATACGCGAATAC-AGTGGAAGTGTGTGTTAAGCATTGTGTCCCGAA 139
||||| |||||||||||||||| ||| | |||||||||||||||| || ||| |||||||
Sbjct 61 ATGATTGTTTCAACATACGCGAGTACGA-TGGAAGTGTGTGTTAAACACTGTATCCCGAA 119
Query 140 TCAGTGCATGAAAGTTTCTAAAAAGGCAACTATTCCTTTATGTGAGAATGCTTGCA-AAA 198
||| ||||||||||||||| ||||||||||| |||| |||||||||| |||||||| |||
Sbjct 120 TCAATGCATGAAAGTTTCTCAAAAGGCAACTCTTCCATTATGTGAGACTGCTTGCACAAA 179
Query 199 AGCTCTGCAACCAAAACAAA 218
| || ||||| ||||||||
Sbjct 180 A-CTTTGCAATGAAAACAAA 198
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 14678182708
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5