BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925212
Length=316
Score E
Sequences producing significant alignments: (Bits) Value
AT5G34828.1 | Symbols: | Plant thionin family protein | chr5:1... 339 1e-92
AT5G38378.1 | Symbols: | Plant thionin family protein | chr5:1... 250 6e-66
AT1G58245.1 | Symbols: | Plant thionin family protein | chr1:2... 235 2e-61
> AT5G34828.1 | Symbols: | Plant thionin family protein | chr5:13094069-13094344
REVERSE LENGTH=276
Length=276
Score = 339 bits (183), Expect = 1e-92
Identities = 247/278 (89%), Gaps = 4/278 (1%)
Strand=Plus/Plus
Query 21 ATGGCGACTCAAATAATGCAAAAGATATACAGTGTTTTGATGATCGTAGTTTTATTTACG 80
||||||||||||| ||| |||||||||||||||||||||| || |||| ||||||||||
Sbjct 1 ATGGCGACTCAAACAATAAAAAAGATATACAGTGTTTTGATCATTGTAGCTTTATTTACG 60
Query 81 ATGATGGTTTCAACATACGCGAGTACGGTCGAGGTGTGTGTTAAGCATTGTGTCCCGAAT 140
|||||||||||||||| ||||||||| | || | |||||||| ||||||||||| |||
Sbjct 61 ATGATGGTTTCAACATTTGCGAGTACGATAGAAATATGTGTTAAACATTGTGTCCCAAAT 120
Query 141 CAGTGCATGAAAA-T-TTCTAAAAAGGCAACTATTCCTTTATGTGAGAATGCTTGCAAAA 198
|||||||| |||| | || ||||||||||||| |||||||||||||||||||||||||||
Sbjct 121 CAGTGCAT-AAAAGTGTT-TAAAAAGGCAACTCTTCCTTTATGTGAGAATGCTTGCAAAA 178
Query 199 AGCTCTGCAACCAAAACAAATTTTCTGATGAGAAATTCTACGCCATGCCTCCAGGAGACT 258
| ||||||||||| ||||||||| || ||| |||||||||| |||||||||| |||||
Sbjct 179 AACTCTGCAACCAGAACAAATTTGCTCATGTGAAATTCTACTCCATGCCTCCTCAAGACT 238
Query 259 TATGCGAGGGATTTTTTGGGTTACTATGTAATAACTGA 296
| ||||||||||||||||| ||||||||||||||||||
Sbjct 239 TGTGCGAGGGATTTTTTGGTTTACTATGTAATAACTGA 276
> AT5G38378.1 | Symbols: | Plant thionin family protein | chr5:15344448-15344711
FORWARD LENGTH=264
Length=264
Score = 250 bits (135), Expect = 6e-66
Identities = 179/200 (90%), Gaps = 4/200 (2%)
Strand=Plus/Plus
Query 21 ATGGCGACTCAAATAATGCAAAAGATATACAGTGTTTTGATGATCGTAGTTTTATTTACG 80
||||| ||||||| ||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct 1 ATGGCAACTCAAACAATAAAAAAGATATACAGTGTTTTGATGATTGTAGTTTTATTTACG 60
Query 81 ATGATGGTTTCAAC-ATACGCGAGTACGGTCGAGGTGTGTGTTAAGCATTGTGTCCCGAA 139
|||||||||||||| | ||||||||||||| || ||||||||||||||||||||||||||
Sbjct 61 ATGATGGTTTCAACCA-ACGCGAGTACGGTGGAAGTGTGTGTTAAGCATTGTGTCCCGAA 119
Query 140 TCAGTGCATGAAAATTTCTAAAAAGGCAACTATTCCTTTATGTGAGAATGCTTGCA-AAA 198
|| ||||||||| ||||| | ||||||||| |||| |||||||||| |||||||| |||
Sbjct 120 CCAATGCATGAAAGTTTCTCAGAAGGCAACTCTTCCATTATGTGAGACTGCTTGCACAAA 179
Query 199 AGCTCTGCAACCAAAACAAA 218
| |||||||| ||||||||
Sbjct 180 A-CTCTGCAATGAAAACAAA 198
> AT1G58245.1 | Symbols: | Plant thionin family protein | chr1:21584252-21584524
REVERSE LENGTH=273
Length=273
Score = 235 bits (127), Expect = 2e-61
Identities = 175/199 (88%), Gaps = 0/199 (0%)
Strand=Plus/Plus
Query 36 ATGCAAAAGATATACAGTGTTTTGATGATCGTAGTTTTATTTACGATGATGGTTTCAACA 95
||| ||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 ATGAAAAAGATATGCAGAGTTTTGATGATAGTAGTTTTATTTACGATGATGGTTTCAACA 60
Query 96 TACGCGAGTACGGTCGAGGTGTGTGTTAAGCATTGTGTCCCGAATCAGTGCATGAAAATT 155
|| |||||||| | || ||||||||||| ||||||||||| ||||| ||||||||| ||
Sbjct 61 TATGCGAGTACACTGGAAGTGTGTGTTAAACATTGTGTCCCAAATCAATGCATGAAAGTT 120
Query 156 TCTAAAAAGGCAACTATTCCTTTATGTGAGAATGCTTGCAAAAAGCTCTGCAACCAAAAC 215
||| ||||||||||| | ||||| ||||| ||||| |||||||| |||||||| |||||
Sbjct 121 TCTGAAAAGGCAACTCTACCTTTGTGTGAAAATGCATGCAAAAAACTCTGCAATGAAAAC 180
Query 216 AAATTTTCTGATGAGAAAT 234
|| |||||| |||||||||
Sbjct 181 AAGTTTTCTCATGAGAAAT 199
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 14678182708
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5