BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg925214

Length=235
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G11410.1 | Symbols: ATPP2CA, AHG3, PP2CA | protein phosphata...   152    1e-36


> AT3G11410.1 | Symbols: ATPP2CA, AHG3, PP2CA | protein phosphatase 
2CA | chr3:3583883-3585790 REVERSE LENGTH=1639
Length=1639

 Score =  152 bits (82),  Expect = 1e-36
 Identities = 106/118 (90%), Gaps = 0/118 (0%)
 Strand=Plus/Plus

Query  41   ATCCACCGCTGTCGTCTCTGTTGTCACGCCGGAGAAGATCATTGTTTCCAAATGCGGCGA  100
            |||||||||||| || || ||||||||||||||||||||||||||||| || ||||| ||
Sbjct  804  ATCCACCGCTGTTGTATCGGTTGTCACGCCGGAGAAGATCATTGTTTCTAATTGCGGTGA  863

Query  101  TTCACGTGCCGTGCTTTGCCATAACGGCGTAGCCATTCCTCTCTCCGTGGATCACAAG  158
            |||||| || |||||||| | |||||| |||||||||||||||||||| |||||||||
Sbjct  864  TTCACGGGCTGTGCTTTGTCGTAACGGTGTAGCCATTCCTCTCTCCGTAGATCACAAG  921


 Score = 89.8 bits (48),  Expect = 1e-17
 Identities = 50/51 (98%), Gaps = 0/51 (0%)
 Strand=Plus/Plus

Query  158   GGATGGAGCTAGGGTTCTTGGAGTTCTTGCTATGTCTAGAGCAATTGGTGA  208
             |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  981   GGATGGAGCTAGGGTTCTTGGAGTTCTTGCCATGTCTAGAGCAATTGGTGA  1031



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10606495039


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5