BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925216
Length=317
Score E
Sequences producing significant alignments: (Bits) Value
AT5G34828.1 | Symbols: | Plant thionin family protein | chr5:1... 333 6e-91
AT5G36805.1 | Symbols: | Plant thionin family protein | chr5:1... 255 1e-67
AT5G36720.1 | Symbols: | Plant thionin family protein | chr5:1... 255 1e-67
AT5G38378.1 | Symbols: | Plant thionin family protein | chr5:1... 250 6e-66
> AT5G34828.1 | Symbols: | Plant thionin family protein | chr5:13094069-13094344
REVERSE LENGTH=276
Length=276
Score = 333 bits (180), Expect = 6e-91
Identities = 247/279 (89%), Gaps = 6/279 (2%)
Strand=Plus/Plus
Query 21 ATGGCGACTCAAACAATGAAAAATATATACAGTGTTTTGATGATCGTA-CTTTTATTTAC 79
||||||||||||||||| ||||| ||||||||||||||||| || ||| | |||||||||
Sbjct 1 ATGGCGACTCAAACAATAAAAAAGATATACAGTGTTTTGATCATTGTAGC-TTTATTTAC 59
Query 80 AATGATGGTTTCAACATACGCGAGTACGGTGGAAGTGTGTGTTAAGCATTGTGTCCCGAA 139
|||||||||||||||| ||||||||| | ||| | |||||||| ||||||||||| ||
Sbjct 60 GATGATGGTTTCAACATTTGCGAGTACGATAGAAATATGTGTTAAACATTGTGTCCCAAA 119
Query 140 TCAGTGCATGAAAA-T-TTCTAAAAAGGTAACTATTCCTTTATGTGAGAATGCTTGCAAA 197
||||||||| |||| | || |||||||| |||| ||||||||||||||||||||||||||
Sbjct 120 TCAGTGCAT-AAAAGTGTT-TAAAAAGGCAACTCTTCCTTTATGTGAGAATGCTTGCAAA 177
Query 198 AAGCTCTGCAACCAAAACAAATTTTCTGATGAGAAATACTACACCATGCCTCCTGGAGAC 257
|| ||||||||||| ||||||||| || ||| ||||| |||| ||||||||||| ||||
Sbjct 178 AAACTCTGCAACCAGAACAAATTTGCTCATGTGAAATTCTACTCCATGCCTCCTCAAGAC 237
Query 258 TTATGCGAGGGATTTTTTGGGTTACTATGTAATAACTGA 296
|| ||||||||||||||||| ||||||||||||||||||
Sbjct 238 TTGTGCGAGGGATTTTTTGGTTTACTATGTAATAACTGA 276
> AT5G36805.1 | Symbols: | Plant thionin family protein | chr5:14488961-14489224
REVERSE LENGTH=264
Length=264
Score = 255 bits (138), Expect = 1e-67
Identities = 179/199 (90%), Gaps = 2/199 (1%)
Strand=Plus/Plus
Query 21 ATGGCGACTCAAACAATGAAAAATATATACAGTGTTTTGATGATCGTACTTTTATTTACA 80
||||| ||||||||||| ||||| |||||||||||||||||||| ||| ||||||| ||
Sbjct 1 ATGGCAACTCAAACAATAAAAAAGATATACAGTGTTTTGATGATTGTAGTTTTATTAACG 60
Query 81 ATGATGGTTTCAACATACGCGAGTACGGTGGAAGTGTGTGTTAAGCATTGTGTCCCGAAT 140
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 61 ATGATTGTTTCAACATACGCGAGTACGGTGGAAGTATGTGTTAAGCATTGTGTCCCGAAT 120
Query 141 CAGTGCATGAAAATTTCTAAAAAGGTAACTATTCCTTTATGTGAGAATGCTTGCA-AAAA 199
|| ||||||||| ||||| |||||| |||| |||| |||||||||| |||||||| ||||
Sbjct 121 CAATGCATGAAAGTTTCTCAAAAGGCAACTCTTCCATTATGTGAGACTGCTTGCACAAAA 180
Query 200 GCTCTGCAACCAAAACAAA 218
|||||||| ||||||||
Sbjct 181 -CTCTGCAATGAAAACAAA 198
> AT5G36720.1 | Symbols: | Plant thionin family protein | chr5:14429661-14429924
REVERSE LENGTH=264
Length=264
Score = 255 bits (138), Expect = 1e-67
Identities = 179/199 (90%), Gaps = 2/199 (1%)
Strand=Plus/Plus
Query 21 ATGGCGACTCAAACAATGAAAAATATATACAGTGTTTTGATGATCGTACTTTTATTTACA 80
||||| ||||||||||| ||||| |||||||||||||||||||| ||| ||||||| ||
Sbjct 1 ATGGCAACTCAAACAATAAAAAAGATATACAGTGTTTTGATGATTGTAGTTTTATTAACG 60
Query 81 ATGATGGTTTCAACATACGCGAGTACGGTGGAAGTGTGTGTTAAGCATTGTGTCCCGAAT 140
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 61 ATGATTGTTTCAACATACGCGAGTACGGTGGAAGTATGTGTTAAGCATTGTGTCCCGAAT 120
Query 141 CAGTGCATGAAAATTTCTAAAAAGGTAACTATTCCTTTATGTGAGAATGCTTGCA-AAAA 199
|| ||||||||| ||||| |||||| |||| |||| |||||||||| |||||||| ||||
Sbjct 121 CAATGCATGAAAGTTTCTCAAAAGGCAACTCTTCCATTATGTGAGACTGCTTGCACAAAA 180
Query 200 GCTCTGCAACCAAAACAAA 218
|||||||| ||||||||
Sbjct 181 -CTCTGCAATGAAAACAAA 198
> AT5G38378.1 | Symbols: | Plant thionin family protein | chr5:15344448-15344711
FORWARD LENGTH=264
Length=264
Score = 250 bits (135), Expect = 6e-66
Identities = 179/200 (90%), Gaps = 4/200 (2%)
Strand=Plus/Plus
Query 21 ATGGCGACTCAAACAATGAAAAATATATACAGTGTTTTGATGATCGTACTTTTATTTACA 80
||||| ||||||||||| ||||| |||||||||||||||||||| ||| ||||||||||
Sbjct 1 ATGGCAACTCAAACAATAAAAAAGATATACAGTGTTTTGATGATTGTAGTTTTATTTACG 60
Query 81 ATGATGGTTTCAA-CATACGCGAGTACGGTGGAAGTGTGTGTTAAGCATTGTGTCCCGAA 139
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ATGATGGTTTCAACCA-ACGCGAGTACGGTGGAAGTGTGTGTTAAGCATTGTGTCCCGAA 119
Query 140 TCAGTGCATGAAAATTTCTAAAAAGGTAACTATTCCTTTATGTGAGAATGCTTGCA-AAA 198
|| ||||||||| ||||| | |||| |||| |||| |||||||||| |||||||| |||
Sbjct 120 CCAATGCATGAAAGTTTCTCAGAAGGCAACTCTTCCATTATGTGAGACTGCTTGCACAAA 179
Query 199 AGCTCTGCAACCAAAACAAA 218
| |||||||| ||||||||
Sbjct 180 A-CTCTGCAATGAAAACAAA 198
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 14728450457
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5