BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925217
Length=316
Score E
Sequences producing significant alignments: (Bits) Value
AT3G24465.1 | Symbols: | Plant thionin family protein | chr3:8... 305 1e-82
AT1G58248.1 | Symbols: | Plant thionin family protein | chr1:2... 296 8e-80
AT5G38378.1 | Symbols: | Plant thionin family protein | chr5:1... 294 3e-79
AT1G58245.1 | Symbols: | Plant thionin family protein | chr1:2... 268 2e-71
> AT3G24465.1 | Symbols: | Plant thionin family protein | chr3:8894877-8895140
REVERSE LENGTH=264
Length=264
Score = 305 bits (165), Expect = 1e-82
Identities = 231/262 (88%), Gaps = 8/262 (3%)
Strand=Plus/Plus
Query 21 ATGGCAGCTCAAACAATGAAAAAGATATGCAGTGTATTGATGATTGTAGTTTTATTTACG 80
|||||| ||||||||| |||||||||| |||||| ||||||||||||||||||||||||
Sbjct 1 ATGGCAACTCAAACAACAAAAAAGATATACAGTGTTTTGATGATTGTAGTTTTATTTACG 60
Query 81 ATGATGGTTTCAACATACGCGAATTTGGTGGAAGTGTGTGTTAAACATTGTGTTCCGAAT 140
||||| |||||||||||||||| | | ||||||||||||||||||| ||| | ||||||
Sbjct 61 ATGATTGTTTCAACATACGCGAGTACGATGGAAGTGTGTGTTAAACACTGTATCCCGAAT 120
Query 141 CAATGCATGAAAGTTTCT-AACAATGCAACTCTTCCTTTATGTGAGACTGCTTGCAGAAA 199
|||||||||||||||||| || || ||||||||||| ||||||||||||||||||| |||
Sbjct 121 CAATGCATGAAAGTTTCTCAA-AAGGCAACTCTTCCATTATGTGAGACTGCTTGCACAAA 179
Query 200 ACTCTGCAATGAAGACAACCATTCTCATGAGAAATACATCGCGCCTCGAAGTTACTGCGA 259
||| ||||||||| |||| | |||||||||| |||| ||||||||| ||||||||
Sbjct 180 ACTTTGCAATGAAAACAA--AG----ATGAGAAATATATCGTGCCTCGAAGCTACTGCGA 233
Query 260 TGGATTTTTCTGGTTTCTATGT 281
|||||| |||||||||||||||
Sbjct 234 TGGATTATTCTGGTTTCTATGT 255
> AT1G58248.1 | Symbols: | Plant thionin family protein | chr1:21586036-21586311
REVERSE LENGTH=276
Length=276
Score = 296 bits (160), Expect = 8e-80
Identities = 231/265 (87%), Gaps = 6/265 (2%)
Strand=Plus/Plus
Query 21 ATGGCAG-CTCAAACAATGAAAAAGATATGCAGTGTATTGATGATTGTAGTTTTATTTAC 79
||||| | |||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 1 ATGGC-GCCTCAAACAATGAAAAAGATATGCAGTGTTTTGATGATAGTAGTTTTATTTAT 59
Query 80 GATGATGGTTTCAACATACGCGAATTTGGTGGAAGTGTGTGTTAAACATTGTGTTCCGAA 139
|||||||||||||||||| |||| | ||||||||||||||||||||||||| || ||
Sbjct 60 GATGATGGTTTCAACATATGCGAGTACACTGGAAGTGTGTGTTAAACATTGTGTCCCAAA 119
Query 140 TCAATGCATGAAAGTTTCT-AACAATGCAACTCTTCCTTTATGTGAGACTGCTTGCAGAA 198
||||||||||||||||||| || || |||||||||||||| ||||| | ||| |||| ||
Sbjct 120 TCAATGCATGAAAGTTTCTGAA-AAGGCAACTCTTCCTTTGTGTGAAAATGCATGCAAAA 178
Query 199 AACTCTGCAATGAAGACAACCATTCTCATGAGAAATAC-ATCGCGCCTCGAAGTTACTGC 257
|||||||||||||| |||| |||||||||||||| | |||| ||||||||||||||||
Sbjct 179 AACTCTGCAATGAAAACAAGTTTTCTCATGAGAAAT-CGATCGTGCCTCGAAGTTACTGC 237
Query 258 GATGGATTTTTCTGGTTTCTATGTA 282
||||| || | |||| |||||||
Sbjct 238 GATGGGTTATGGTGGTGGCTATGTA 262
> AT5G38378.1 | Symbols: | Plant thionin family protein | chr5:15344448-15344711
FORWARD LENGTH=264
Length=264
Score = 294 bits (159), Expect = 3e-79
Identities = 230/263 (87%), Gaps = 10/263 (4%)
Strand=Plus/Plus
Query 21 ATGGCAGCTCAAACAATGAAAAAGATATGCAGTGTATTGATGATTGTAGTTTTATTTACG 80
|||||| |||||||||| |||||||||| |||||| ||||||||||||||||||||||||
Sbjct 1 ATGGCAACTCAAACAATAAAAAAGATATACAGTGTTTTGATGATTGTAGTTTTATTTACG 60
Query 81 ATGATGGTTTCAAC-ATACGCGAATTTGGTGGAAGTGTGTGTTAAACATTGTGTTCCGAA 139
|||||||||||||| | |||||| | |||||||||||||||||| |||||||| |||||
Sbjct 61 ATGATGGTTTCAACCA-ACGCGAGTACGGTGGAAGTGTGTGTTAAGCATTGTGTCCCGAA 119
Query 140 TCAATGCATGAAAGTTTCTAACAATGCAACTCTTCCTTTATGTGAGACTGCTTGCAGAAA 199
|||||||||||||||||| | || ||||||||||| ||||||||||||||||||| |||
Sbjct 120 CCAATGCATGAAAGTTTCTCAGAAGGCAACTCTTCCATTATGTGAGACTGCTTGCACAAA 179
Query 200 ACTCTGCAATGAAGACAACCATTCTCATGAGAAATACATCGCGCCTCGAAGTTACTGCGA 259
||||||||||||| |||| | | ||||| |||| ||| |||||| |||||||| ||
Sbjct 180 ACTCTGCAATGAAAACAA--A--C--ATGAGGAATATGTCGTGCCTCGGAGTTACTGTGA 233
Query 260 TGGATT-TTTCTGGTTTCTATGT 281
||||| ||| ||||||||||||
Sbjct 234 GGGATTATTT-TGGTTTCTATGT 255
> AT1G58245.1 | Symbols: | Plant thionin family protein | chr1:21584252-21584524
REVERSE LENGTH=273
Length=273
Score = 268 bits (145), Expect = 2e-71
Identities = 215/249 (86%), Gaps = 4/249 (2%)
Strand=Plus/Plus
Query 36 ATGAAAAAGATATGCAGTGTATTGATGATTGTAGTTTTATTTACGATGATGGTTTCAACA 95
||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||
Sbjct 1 ATGAAAAAGATATGCAGAGTTTTGATGATAGTAGTTTTATTTACGATGATGGTTTCAACA 60
Query 96 TACGCGAATTTGGTGGAAGTGTGTGTTAAACATTGTGTTCCGAATCAATGCATGAAAGTT 155
|| |||| | ||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 61 TATGCGAGTACACTGGAAGTGTGTGTTAAACATTGTGTCCCAAATCAATGCATGAAAGTT 120
Query 156 TCT-AACAATGCAACTCTTCCTTTATGTGAGACTGCTTGCAGAAAACTCTGCAATGAAGA 214
||| || || |||||||| ||||| ||||| | ||| |||| |||||||||||||||| |
Sbjct 121 TCTGAA-AAGGCAACTCTACCTTTGTGTGAAAATGCATGCAAAAAACTCTGCAATGAAAA 179
Query 215 CAACCATTCTCATGAGAAATAC-ATCGCGCCTCGAAGTTACTGCGATGGATTTTTCTGGT 273
||| |||||||||||||| | || | ||||||||||||||||||||| || | ||||
Sbjct 180 CAAGTTTTCTCATGAGAAAT-CGATTGTGCCTCGAAGTTACTGCGATGGGTTATGGTGGT 238
Query 274 TTCTATGTA 282
|||||||
Sbjct 239 GGCTATGTA 247
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 14678182708
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5