BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg925221

Length=691
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G58270.1 | Symbols: ZW9 | TRAF-like family protein | chr1:21...   499    1e-140


> AT1G58270.1 | Symbols: ZW9 | TRAF-like family protein | chr1:21612116-21614117 
REVERSE LENGTH=1497
Length=1497

 Score =  499 bits (270),  Expect = 1e-140
 Identities = 457/539 (85%), Gaps = 46/539 (9%)
 Strand=Plus/Plus

Query  1     CCTCATCACCAATCCGAAAGATGTGTACGCAGATATCACATTCCTCGCTTATAAAAGCAG  60
             ||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct  502   CCTCATCACCAATCCAAAAGATGTGTATGCAGAGATCACATTCCTCGCTTATAAAAGCAG  561

Query  61    TACAGACAAGTACCAATCATACCAAGTTTGATTGGTTTGCAGAGACCGATGCGCAGCGAT  120
             ||||||||||||||||  ||   |||    |       |  ||||| || || |||||||
Sbjct  562   TACAGACAAGTACCAA--AT---AAG--CCA-------G--GAGACTGAGGCCCAGCGAT  605

Query  121   TTCATTTGTTTAAACAACAGTGGGGACTATTAAC-TTTTCTTCCGCTTGAATATTTTAG-  178
             |||||||||||||||||||||||||||| || ||  ||||| ||  || | |||||| | 
Sbjct  606   TTCATTTGTTTAAACAACAGTGGGGACT-TTTACAATTTCTACCAATTTACTATTTT-GA  663

Query  179   AAATCCGGGATATGGATACTCTTTCGACGACGGAAGCGTTGTGTTTGGCGTTGACATCAA  238
             |||||||| ||||||||||| |||||| | || |||||||||||||||||||||||||||
Sbjct  664   AAATCCGGCATATGGATACTTTTTCGAGGGCGAAAGCGTTGTGTTTGGCGTTGACATCAA  723

Query  239   C--------A--CTTTGAAAAATGGGAAGTTTTCTCTAACGAACAAAACATTCGTGACCC  288
             |        |  ||||||||| |||||||| |||||||| ||||||||||||||||||||
Sbjct  724   CATTGTTAAACCCTTTGAAAATTGGGAAGTGTTCTCTAATGAACAAAACATTCGTGACCC  783

Query  289   TATTTTCGAATGGAGGCTCACCAAATTCTCTACAC-TCTTTCATGACTCTTACACTTCTG  347
             ||||||||||||||| ||||||||||||||||||| | |||| |||||||||||||||||
Sbjct  784   TATTTTCGAATGGAGACTCACCAAATTCTCTACACGT-TTTCTTGACTCTTACACTTCTG  842

Query  348   ATTACTTTTCTTCCGGTGGAAGAAACTG----T-G----T--ATCCAAATGGAGTTGGAA  396
             ||| |||||||||||| |||||||||||    | |    |  ||||||||||||||||||
Sbjct  843   ATTCCTTTTCTTCCGGAGGAAGAAACTGGGCATTGAAAGTGTATCCAAATGGAGTTGGAA  902

Query  397   ATGCAACGGGTAATTCGTTGTCACTCTATTTGTTGAATGA---GTCAAATGATAAGGGTT  453
             |||| ||||||||||||||||||||||||||||||| |||   |||||||||||||||||
Sbjct  903   ATGCTACGGGTAATTCGTTGTCACTCTATTTGTTGAGTGATCAGTCAAATGATAAGGGTT  962

Query  454   ACGTGGAAGCCAAGTTACAAATTATTGACCAGAACCAATCCAACCATTTCGTGaaaaaa  512
             | |||||||| ||||||| | |||||||||||| |||||||||| |||||| |||||||
Sbjct  963   ATGTGGAAGCTAAGTTACGAGTTATTGACCAGATCCAATCCAACAATTTCGAGAAAAAA  1021



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 33455941902


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5