BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925222
Length=763
Score E
Sequences producing significant alignments: (Bits) Value
AT1G58260.1 | Symbols: CYP79C2, CYP79C3P | cytochrome p450 79c2... 737 0.0
AT1G58265.1 | Symbols: | Cytochrome P450 superfamily protein |... 193 3e-48
> AT1G58260.1 | Symbols: CYP79C2, CYP79C3P | cytochrome p450 79c2
| chr1:21605752-21607995 FORWARD LENGTH=1593
Length=1593
Score = 737 bits (399), Expect = 0.0
Identities = 510/562 (91%), Gaps = 14/562 (2%)
Strand=Plus/Plus
Query 40 TTGGTGAAGCT-GTAGAGAATGGCGGTCTCGAGCAAAAAGAGAAAGAGCATATGGACGCA 98
||| ||||| | |||||||| |||||||||| || |||||||||||||||||||||||||
Sbjct 611 TTGATGAAG-TGGTAGAGAACGGCGGTCTCGGGCCAAAAGAGAAAGAGCATATGGACGCA 669
Query 99 ATATACCTAGCTCTTGATTGCTTTTTCAGCTTCAACTTAACAAATTACATCCCTTTTCTT 158
|||||||| ||||||||||| ||||||||||| |||||||| ||||||||||||||||||
Sbjct 670 ATATACCTTGCTCTTGATTGTTTTTTCAGCTTTAACTTAACGAATTACATCCCTTTTCTT 729
Query 159 AGTGGGTGGAACGTAGATAAAGAGGAGA-AGGAGGTAAGAGAAGCGGTTCATATAATCAA 217
|| || |||||||||||||||| ||||| | || ||||||||||||||||||||||||||
Sbjct 730 AGAGGATGGAACGTAGATAAAGCGGAGACA-GAAGTAAGAGAAGCGGTTCATATAATCAA 788
Query 218 CAGATGTAACGACCCGATCATCCAAGCCAGAATACGTTTATGGAGGAAGAAAGGCGGAAA 277
| |||||| ||||| |||||||||| ||||||| |||||||||||||||||| |||||
Sbjct 789 TATATGTAATGACCCCATCATCCAAGAAAGAATACATTTATGGAGGAAGAAAGGTGGAAA 848
Query 278 AGCTACA--GAAGAAGACTGGCTCGATATCCTCATCACGTCAAAAGATGATCAAGGAATG 335
| | | | ||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 849 A-C-AAATGGAAGAAGACTGGCTCGATATCCTTATCACGTTAAAAGATGATCAAGGAATG 906
Query 336 CATCTGTACACATTTGATGAGATTAGGGCTCAATGCAAGGAAATCAAT-TTAGCAACAAT 394
||| ||| |||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 907 CATTTGTTCACATTTGATGAGATTAGGGCTCAATGCAAGGAAATCAATCTT-GCAACAAT 965
Query 395 TGACAAT-CTGATGAATAACGTGGAGTGGACGATAGCGGAGAT-TCTGAACCATCCAGAA 452
||||||| | |||||||||||||||||||||||| |||||||| | | || || |||||
Sbjct 966 TGACAATAC-GATGAATAACGTGGAGTGGACGATCGCGGAGATGT-TAAATCACCCAGAG 1023
Query 453 ATTCTTGAGAAAGCCACAAATGAATTGGACATGATAGTTGGGAAAGACAGACTTGTGCAA 512
|||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||
Sbjct 1024 ATTCTTGAGAAAGCCACAAATGAACTGGACATAATAGTTGGTAAAGACAGACTTGTGCAA 1083
Query 513 GAATCAGACATACCAAAACTCAACTACATCAAAGCTTGTAGCAGAGAATCTTTTCGGCTA 572
|||||||||||| || ||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 1084 GAATCAGACATATCACAACTCAACTACATCAAAGCATGTAGCAAAGAATCTTTTCGGCTT 1143
Query 573 CACCCAGCTAATGTGTTCATGC 594
||||||||||||||||||||||
Sbjct 1144 CACCCAGCTAATGTGTTCATGC 1165
Score = 228 bits (123), Expect = 7e-59
Identities = 142/151 (94%), Gaps = 2/151 (1%)
Strand=Plus/Plus
Query 593 GCTTCTCCAAGGGTTCGAATGGACTCTCCCTAATGGTAAAA-CTCAAGTCGAACTCATTT 651
|||| ||||||||||||||||||||||||||| |||||||| || ||| || |||||||
Sbjct 1443 GCTTATCCAAGGGTTCGAATGGACTCTCCCTATTGGTAAAAGTTC-AGTGGAGCTCATTT 1501
Query 652 CGGCGGAGAGCAACTTGTTTATGGCCAAGCCTCTACTCGCATGCGCGAAACCTAGGTTGG 711
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1502 CGGCGGAGAGTAACTTGTTTATGGCCAAGCCTCTACTCGCATGCGCGAAACCTAGGTTGG 1561
Query 712 CTCCAAGTTTATATCCGAAAATCCAGTTCTA 742
|||||||||||||||||||||||||| ||||
Sbjct 1562 CTCCAAGTTTATATCCGAAAATCCAGATCTA 1592
> AT1G58265.1 | Symbols: | Cytochrome P450 superfamily protein
| chr1:21610909-21611388 FORWARD LENGTH=480
Length=480
Score = 193 bits (104), Expect = 3e-48
Identities = 150/172 (87%), Gaps = 3/172 (2%)
Strand=Plus/Plus
Query 593 GCTTCTCCAAGGGTTCGAATGGACTCTCCCTAATGGTAAAACTCAAGTCGAACTCATTTC 652
|||||||||||||||||||||||||||||||||||| |||| |||| |||||||||| ||
Sbjct 258 GCTTCTCCAAGGGTTCGAATGGACTCTCCCTAATGGAAAAATTCAACTCGAACTCATCTC 317
Query 653 GGCGGAGAGCAACTTGTTTATGGCCAAGCCTCTACTCGCATGCGCGAAACCTAGGTTGGC 712
||||| || ||||||||||| |||||||||||||||| || |||||| || | |||||
Sbjct 318 AGCGGAAAGTAACTTGTTTATCGCCAAGCCTCTACTCGGATCCGCGAA-CCAATTTTGGC 376
Query 713 TCCAAGTTTATATCCGAAAATCCAGTTCTAA-AATTTCTACAAGTTGTTTGG 763
||||||||||||||||||||| ||| || || ||||| || || |||||||
Sbjct 377 TCCAAGTTTATATCCGAAAATTCAGATC-AAGAATTTTTAGAAAATGTTTGG 427
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37072800486
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5