BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg925245

Length=826
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G18340.1 | Symbols:  | F-box and associated interaction doma...  65.8    6e-10
  AT2G07120.1 | Symbols:  | F-box associated ubiquitination effec...  65.8    6e-10


> AT3G18340.1 | Symbols:  | F-box and associated interaction domains-containing 
protein | chr3:6294018-6295134 FORWARD LENGTH=1086
Length=1086

 Score = 65.8 bits (35),  Expect = 6e-10
 Identities = 42/45 (93%), Gaps = 1/45 (2%)
 Strand=Plus/Plus

Query  289  AATAATGTGTCCTTGAATGGAAATTTGTATTGGCCAGCTTACAAT  333
            ||| ||||||||||||||||||||||||||||| | |||||||||
Sbjct  557  AAT-ATGTGTCCTTGAATGGAAATTTGTATTGGACTGCTTACAAT  600


> AT2G07120.1 | Symbols:  | F-box associated ubiquitination effector 
family protein | chr2:2953605-2954722 REVERSE LENGTH=1062
Length=1062

 Score = 65.8 bits (35),  Expect = 6e-10
 Identities = 42/45 (93%), Gaps = 1/45 (2%)
 Strand=Plus/Plus

Query  289  AATAATGTGTCCTTGAATGGAAATTTGTATTGGCCAGCTTACAAT  333
            ||| ||||||||||||||||||||||||||||| | |||||||||
Sbjct  533  AAT-ATGTGTCCTTGAATGGAAATTTGTATTGGACTGCTTACAAT  576



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 40237551747


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5