BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg925246

Length=1149
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G53325.1 | Symbols:  | F-box associated ubiquitination effec...   303    2e-81


> AT1G53325.1 | Symbols:  | F-box associated ubiquitination effector 
family protein | chr1:19895227-19895733 REVERSE LENGTH=507
Length=507

 Score =  303 bits (164),  Expect = 2e-81
 Identities = 364/457 (80%), Gaps = 27/457 (6%)
 Strand=Plus/Plus

Query  619   ATGGAAATTTGTTTTCGACAGCTTATGATTTCGAAACTGGTCAGTATATCAT-CAGAAT-  676
             ||||||||||||  | |||||||||| ||| | |||||||||||||| |||| || ||| 
Sbjct  1     ATGGAAATTTGTACTGGACAGCTTATAATTCCAAAACTGGTCAGTATTTCATCCA-AATG  59

Query  677   -CTTCGATTTTTCCAAAGAGATAGTGAAGCCCTTTTGTATTCTACCGTGT---GAGAAG-  731
              | |||||||||||||||||| | | |||   || ||||||||||| |||   | |||| 
Sbjct  60    GC-TCGATTTTTCCAAAGAGACATTAAAGATGTTCTGTATTCTACCATGTAAGGCGAAGA  118

Query  732   AAAGATTCAAAC-CAAACTCATGCCCT-TGCGGTTTACAAGGGAGATCGATTTTC-GTTG  788
             |||| | |  || || |||| |  ||| | |  ||||||| |||||||| ||||| | ||
Sbjct  119   AAAG-TAC-TACTCATACTCGTATCCTCT-CTATTTACAAAGGAGATCGGTTTTCAG-TG  174

Query  789   TTAGAACAATGCTATAA-AACGAGCAAGATTGAGATTTGGGTTACAAAGAAGAAAATTAG  847
              | ||||||||| | || ||| ||  |||||||||||||||| |||||||| |||||| |
Sbjct  175   ATGGAACAATGC-AAAAGAACAAGGGAGATTGAGATTTGGGTGACAAAGAATAAAATTGG  233

Query  848   TAATGGGGATGATGGAGACAATGTGGTGTGGATTAAGTTCATGACTGTCTCAATACCTAA  907
             |||||||||||||||| || |||| |||||||||||||||||||||||||||||||||||
Sbjct  234   TAATGGGGATGATGGAAACGATGTTGTGTGGATTAAGTTCATGACTGTCTCAATACCTAA  293

Query  908   CTTCCCCA-GGT--TTTATCACACGTTTT-CGAGATACATGGTCGATAATAATATCTGTG  963
             |||||||| |||  ||| ||| |  || | | || ||| | |||||| ||| ||||| ||
Sbjct  294   CTTCCCCATGGTACTTTGTCATAA-TTCTACAAGTTACTTCGTCGATGATAGTATCTCTG  352

Query  964   GAAAGACCTTCGTCATGTGTTGTCCCGATGACA-AAAC-TAGACGGGCTTGGGTCTATGT  1021
             | |||| ||||||  | |||| | |  |  | | |||| || ||  |||||||||||| |
Sbjct  353   GGAAGAGCTTCGTTTTATGTTTTTCT-ACCA-AGAAACCTAAACAAGCTTGGGTCTATAT  410

Query  1022  TGTGAGGGGAGATCTTTGCAAGAAGATTAAAATAGAT  1058
             ||||||||||||||| ||||| |||||||| ||||||
Sbjct  411   TGTGAGGGGAGATCTGTGCAAAAAGATTAAGATAGAT  447



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 56375212035


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5