BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925248
Length=1160
Score E
Sequences producing significant alignments: (Bits) Value
AT1G58090.1 | Symbols: | F-box and associated interaction doma... 1415 0.0
AT1G59630.1 | Symbols: | F-box associated ubiquitination effec... 479 3e-134
AT5G37040.1 | Symbols: | F-box family protein | chr5:14639135-... 353 2e-96
> AT1G58090.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr1:21510510-21511625 FORWARD LENGTH=1116
Length=1116
Score = 1415 bits (766), Expect = 0.0
Identities = 1015/1132 (90%), Gaps = 29/1132 (3%)
Strand=Plus/Plus
Query 21 ATGGTGGCGAGAAAGCTTCCATTAGATCTGGAAGAAGAGATACTCTTTCGAGTTCCACCT 80
|||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGTGTCGAAAAAGCTTCCATTAGATCTGGAAGAAGAGATACTCTTTCGAGTTCCACCT 60
Query 81 CGATCTCTCCTTCGCTTCAGATCCGTTTGCAGAGAATGGAACACTCTTTTCCACAATAAG 140
||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 61 CGATCTCTCGTTCGCTTCAGATCCGTTTGCAGAGAATGGAACACTCTTTTCAAGAATAAG 120
Query 141 AGATTCATCAACAAAAACTTTGCTTCCGGTCGCCCAGAATTCATGTTAAAGACACATTCC 200
||||||||||||||||||||||||| |||||| |||||| |||||||||| ||||||||
Sbjct 121 AGATTCATCAACAAAAACTTTGCTTGCGGTCGGCCAGAAATCATGTTAAATACACATTCA 180
Query 201 CATCTTTATTCAATAAGCGTCGATCTC--A-ACGAAAATCCAACTATAAAGGTGCGTGAT 257
||| ||||||| ||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 181 CATATTTATTCGATAAGCGTCGATCTCAAAGACGAAAATCCAACTATAAAGGTGCGTGAT 240
Query 258 TTACGCTTTGATCATTTACGCGGTCGCCGTTATCATCTCCATGGGACCTGCGATGGTTAT 317
|||||||||||||||||| | | ||| |||||||||| |||||| |||||||||| |
Sbjct 241 TTACGCTTTGATCATTTAAGTTGCCGCGGTTATCATCTGTATGGGATCTGCGATGGTAAC 300
Query 318 TTTTTCATGTATGA-CTTTCATAAAGGAGGTGGAGGCGTGGTTTCGAACCCGTTG--TT- 373
|| ||||||||| | ||||| ||| ||||| |||||||| |||| |||||||||| ||
Sbjct 301 TTCTTCATGTAT-AGCTTTCTTAATGGAGGCGGAGGCGTTGTTTGGAACCCGTTGTTTTG 359
Query 374 GAGACATACTAAATGGATTGCCAAGGCTGAGTATATATGTGGCAGGGGCATGGGTTACGA 433
|||||| |||||||||||||||||||||||| ||| |||||||| || ||| ||||||||
Sbjct 360 GAGACAGACTAAATGGATTGCCAAGGCTGAGAATACATGTGGCAAGGCCATTGGTTACGA 419
Query 434 TGGTAGTAGACCCGAAAAGAGTTACAAGATTATTGGGATGTCGGAAT-GTCATTCGTGGG 492
|||||||||||||||||||||||||||||||| | ||| ||| | || ||| |||
Sbjct 420 TGGTAGTAGACCCGAAAAGAGTTACAAGATTA-TCGGA---AGGAGTAGTTGTTCTTGGC 475
Query 493 ATGG--AA-TTACT-ACGACATATTCAGTAGCCGAATTTGCAACCAATGCGTGGAAGGTT 548
| || || ||||| | ||||||||||| ||||||||||||||||||||||||||||
Sbjct 476 AGGGTAAAGTTACTGA-TACATATTCAGTCTTCGAATTTGCAACCAATGCGTGGAAGGTT 534
Query 549 ACTGATCATACCCGTTTTAAAGAAGAGCTAGAGTTAATAAGCGAAACGTGTGA-TAATGG 607
|||||||||||||||||| | ||| ||| ||| ||||| | | || || | ||
Sbjct 535 ACTGATCATACCCGTTTTCACGAAAAGCCAGAATTAAT--G-G--AC----GACT-CCGG 584
Query 608 TAGGGTCTCCCTGAATGGAAATTTGTACTGGACAGCTTATACTTATCCCCAAACTGGTCA 667
||||||||||||||||||||||||||||||||||||||||| || |||||| ||||||||
Sbjct 585 TAGGGTCTCCCTGAATGGAAATTTGTACTGGACAGCTTATAATTCTCCCCACACTGGTCA 644
Query 668 GTATTTCATCTTAATGCTCGATTTTTCGAAAGAGATAGAAATGTGTCAAAAGACCTTTTG 727
|||||||||| ||||||||||||||||||||||||||||| | ||| ||||||||||||
Sbjct 645 GTATTTCATCGCAATGCTCGATTTTTCGAAAGAGATAGAAAAGAGTCGAAAGACCTTTTG 704
Query 728 TGTTTTACCGTGTAAGGGGaaaaaaaGTACTACACATACTCGTATTCTCTCGATTTACAA 787
||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 705 TGTTTTACCGTGTAAGGGGGAAAAAAGTACTACACATACTCGTATCCTCTCGATTTACAA 764
Query 788 GGGAGATCGGTTTTCAGTGTTAGAACAATCCaaaaaaaCAAGAGAGATTGAGATTTGGGT 847
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 765 GGGAGATCGGTTTTCAGTGTTAGAACAATCCAAAAAAACAAGGGAGATTGAGATTTGGGT 824
Query 848 GACAAAGGATAAAATTGGTAACGGGGATGATGGAGACCATGTGGTGTGGATTAAGTTCAT 907
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 825 GACAAAGGATCAAATTGGTAACGGGGATGATGGAGACGATGTGGTGTGGATTAAGTTCAT 884
Query 908 GACTTTCTCAATACCTGACTTCCCCATGTTACTTTGTAACAGCCCTGCAAGATACTTCGT 967
||| |||||| ||||||||||||||| |||||| || ||| | || |||| ||||| ||
Sbjct 885 GACAGTCTCAAGACCTGACTTCCCCATATTACTTAGTTACATCTCTACAAGTTACTTTGT 944
Query 968 GGATAATAATATATATGGAAAGAGCTTTGTTCTGTGTTGTCCAAGCAAGAGACCTAAAGC 1027
|||||| |||| |||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 945 CGATAATGATATCCATGGGAAGAGCTTTGTTCTGTGTTGTCCTAGCAAGAGACCTAAAGC 1004
Query 1028 AGCTTGGGTGTATATTGTGAGGGGAGATATGTGCAAAAAGATTAAGATAGATCAAGTGCT 1087
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1005 AGCTTGGGTGTATATTGTGAGGGGAGATTTGTGCAAAAAGATTAAGATAGATCAAGTGCT 1064
Query 1088 GTGTGAGTTTGAGTCCTCTGTCTATGTTCCAAGTTTGATCACCATTCCTTGA 1139
||||||||| | ||||||||||||||||| |||||||||||||||||||||
Sbjct 1065 ATGTGAGTTTCAATCCTCTGTCTATGTTCCCAGTTTGATCACCATTCCTTGA 1116
> AT1G59630.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr1:21907177-21907955 REVERSE LENGTH=720
Length=720
Score = 479 bits (259), Expect = 3e-134
Identities = 417/492 (85%), Gaps = 15/492 (3%)
Strand=Plus/Plus
Query 651 TATCCCCAAACTGGTCAGTATTTCATCTTAATGCTCGATTTTTCGAAAGAGATAGAAATG 710
|||||| | |||||||||| ||||||| |||||||||| ||||||||||| | ||
Sbjct 241 TATCCCGACACTGGTCAGTGTTTCATCGAAATGCTCGATCTTTCGAAAGAG---GTAA-- 295
Query 711 TGTCAAAAGACCTTTTGTGTTTTACCGTGTAAGGGGaaaaaaaGTAC-TACACATACTCG 769
| ||||| ||||||| | |||||||||||| ||| |||||||| | || |||||||
Sbjct 296 --T--AAAGATCTTTTGTATCCTACCGTGTAAGGCGAATAAAAGTACTTCCA-ATACTCG 350
Query 770 TATTCTCTCGATTTACAAGGGAGATCGGTTTTCAGTGTTAGAACAATCCaaaaaaaCAAG 829
||| |||||||||||||||||||||||||||||||||||| ||||| ||||| |||| |
Sbjct 351 TATCCTCTCGATTTACAAGGGAGATCGGTTTTCAGTGTTACAACAAAGCAAAAGAACAGG 410
Query 830 AGAGATTGAGATTTGGGTGACAAAGGATAAAATTGGTAACGGGGATGATGGAGACCATGT 889
|||||| | |||||||||||| || | ||||||||||||||||| |||||||| ||||
Sbjct 411 GGAGATTAACATTTGGGTGACAGAGAAGGAAATTGGTAACGGGGATAATGGAGACGATGT 470
Query 890 GGTGTGGATTAAGTTCATGACTTTCTCAATACCTGACTTCCCCATGTTACTTTGTAACAG 949
||||||||| |||||||||||| |||||| ||||||||||||||| |||||| || |||
Sbjct 471 GGTGTGGATGAAGTTCATGACTCTCTCAAGACCTGACTTCCCCATATTACTTAGTCACAT 530
Query 950 CCCTGCAAGATACTTCGTGGATAATAATATATATGGAAAGAGCTTTGTTCTGTGTTGTCC 1009
| || |||| ||||| || |||||| |||| ||||| |||||||| ||||||||||||||
Sbjct 531 CTCTACAAGTTACTTTGTCGATAATGATATCTATGGCAAGAGCTTGGTTCTGTGTTGTCC 590
Query 1010 AAGCAAGAGACCTAAAGCA-GCTTGGGTGTATATTGTGAGGGGAGATATGTGCAAAAAGA 1068
|||| || ||||| | || |||||||| |||||||||||||||||| ||||||||||||
Sbjct 591 TAGCACGAAACCTAGA-CAAGCTTGGGTCTATATTGTGAGGGGAGATCTGTGCAAAAAGA 649
Query 1069 TTAAGATAGATCAAGTGCTGTGTGAG-TTTGAGTCCTCTGTCTATGTTCCAAGTTTGATC 1127
||||||||||| ||||| ||| || ||| |||||||||| |||||||| |||||||||
Sbjct 650 TTAAGATAGATGGAGTGCAATGT-AGGTTTCAGTCCTCTGTTTATGTTCCCAGTTTGATC 708
Query 1128 ACCATTCCTTGA 1139
||||| |||||
Sbjct 709 ACCATAACTTGA 720
> AT5G37040.1 | Symbols: | F-box family protein | chr5:14639135-14639934
FORWARD LENGTH=729
Length=729
Score = 353 bits (191), Expect = 2e-96
Identities = 300/350 (86%), Gaps = 18/350 (5%)
Strand=Plus/Plus
Query 21 ATGGTGGCGAGAAAGCTTCCATTAGATCTGGAAGAAGAGATACTCTTTCGAGTTCCACCT 80
|||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGTGCCGAAAAAGCTTCCATTAGATCTGGAAGAAGAGATACTCTTTCGAGTTCCACCT 60
Query 81 CGATCTCTCC-TTCGCTTCAGATCCGTTTGCAGAGAATGGAACACTCTTTTCCACA-ATA 138
|||||||||| || |||| ||||||||||||| |||||||||| |||||| ||| | |||
Sbjct 61 CGATCTCTCCATT-GCTTTAGATCCGTTTGCAAAGAATGGAACGCTCTTT-CCAGAGATA 118
Query 139 AGAGATTCATCAACAAAAACTTTGCTTCCGGTCGC-CCAGAATTCATGTTAAAGACACAT 197
||||||| ||||||||||||||||||| || || | ||||||||||| |||||||||| |
Sbjct 119 AGAGATTAATCAACAAAAACTTTGCTTGCGCTC-CTCCAGAATTCATCTTAAAGACACGT 177
Query 198 TCCCATCTTTATTCAATAAGCGTCGATCTCAACGA--A-AATCCAACTATAAAGGTGCGT 254
||| || ||||||| ||||||||| |||||||||| | |||||||||||||| ||||||
Sbjct 178 TCCAATATTTATTCGATAAGCGTCAATCTCAACGATGACAATCCAACTATAAATGTGCGT 237
Query 255 GATTTACGCTTTG---ATCATTTACGCGGTCGCCGTTATCATCTCCATGGGACCTGCGAT 311
|| ||| |||||| |||||||||| |||| | || || ||| ||||||||||||||
Sbjct 238 GACTTATGCTTTGGTGATCATTTACGGGGTCAACATTCTC-TCT--ATGGGACCTGCGAT 294
Query 312 GGTTATTTTTTCATGTATGA-C--TTTCATAAAGGAGGTGGAGGCGTGGT 358
||| | || ||| ||||||| | ||||| ||||||| ||| || ||||
Sbjct 295 GGTAACTTCTTCTTGTATGATCACTTTCACGAAGGAGGCGGATGCATGGT 344
Score = 313 bits (169), Expect = 3e-84
Identities = 237/268 (88%), Gaps = 11/268 (4%)
Strand=Plus/Plus
Query 774 CTCTCGATTTACAAGGGAGATCGGTTTTCAGTGTTAGAACAATCCaaaaaaaCAA-GAGA 832
|||||| ||||||||||||||||||| || ||||||||||||||||||||||||| || |
Sbjct 388 CTCTCGGTTTACAAGGGAGATCGGTTCTCGGTGTTAGAACAATCCAAAAAAACAAGGA-A 446
Query 833 GATTGAGATTTGGGTGACAAAGGATAAAATTGGTAACGGGGATGATGGAGACCATGTGGT 892
|||||||||||||||||| ||| ||||||||||||||||||||||||||||| |||||||
Sbjct 447 GATTGAGATTTGGGTGACGAAGAATAAAATTGGTAACGGGGATGATGGAGACGATGTGGT 506
Query 893 GTGGATTAAGTTCATGACTTTCTCAATACCTGACTTCCCCATGTTACT--TT-GTAACA- 948
|||||||||||| |||||| |||||| |||||||||||||||| |||| || || ||
Sbjct 507 GTGGATTAAGTTTATGACTATCTCAAGACCTGACTTCCCCATGGTACTAATTAGTCACCC 566
Query 949 GCCCTGCAAGAT-ACTTCGTGGATAATAATATATATGGAAAGAGC-TTTGTTCTGTGTTG 1006
| | | ||| || |||||||||| |||||||| ||||||||| || |||||||||| |||
Sbjct 567 GTC-TACAA-ATTACTTCGTGGAAAATAATATCTATGGAAAG-GCCTTTGTTCTGTCTTG 623
Query 1007 TCCAAGCAAGAGACCTAAAGCAGCTTGG 1034
||| | ||||| ||||||||||||||||
Sbjct 624 TCCTACCAAGAAACCTAAAGCAGCTTGG 651
Score = 67.6 bits (36), Expect = 3e-10
Identities = 36/36 (100%), Gaps = 0/36 (0%)
Strand=Plus/Plus
Query 433 ATGGTAGTAGACCCGAAAAGAGTTACAAGATTATTG 468
||||||||||||||||||||||||||||||||||||
Sbjct 340 ATGGTAGTAGACCCGAAAAGAGTTACAAGATTATTG 375
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56927418030
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5