BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg925249

Length=514
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G57850.1 | Symbols:  | Toll-Interleukin-Resistance (TIR) dom...   728    0.0  


> AT1G57850.1 | Symbols:  | Toll-Interleukin-Resistance (TIR) domain 
family protein | chr1:21426690-21427349 FORWARD LENGTH=477
Length=477

 Score =  728 bits (394),  Expect = 0.0
 Identities = 451/477 (95%), Gaps = 10/477 (2%)
 Strand=Plus/Plus

Query  21   ATGACGATTTCGTCTCTCACCGATGAC-AC--CCATCGAGTATTCCTCAGTTTCCGAGGA  77
            |||||||||| ||||||| || ||||| ||  ||||||||||||||||||||||||||||
Sbjct  1    ATGACGATTTTGTCTCTCGCCAATGACGACTTCCATCGAGTATTCCTCAGTTTCCGAGGA  60

Query  78   GATCAGTTGCGCTATAGCTTCGTCAGCCACCTTCTTGATGCCTTTAAGAGACATGGAATC  137
            |||||||||||||| ||||| ||||||||||||||||| |||||| ||||||||||||||
Sbjct  61   GATCAGTTGCGCTACAGCTTTGTCAGCCACCTTCTTGACGCCTTTGAGAGACATGGAATC  120

Query  138  TTGTGTTTCGTACACAAAGACGAGCATCTAAGGGGAAAAAACATGACAAACCTTTTTGTA  197
            |||||||| ||| |||||||||||   ||||||||||||| |||||||||||||||||||
Sbjct  121  TTGTGTTTTGTAGACAAAGACGAG---CTAAGGGGAAAAACCATGACAAACCTTTTTGTA  177

Query  198  AGGATTAAAGAGTCGAAGATCGCGCTAGTTATCTTCTCTAGTAGGTATGCGGAGTCGAGT  257
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  178  AGGATTAAAGAGTCGAAGATCGCACTAGTTATCTTCTCTAGTAGGTATGCGGAGTCGAGT  237

Query  258  TGGTGCATGGATGAGCTGGTGAAGATGAAGAAACGTGTGGATAAAGGAAAGCTCCAAGTC  317
            ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  238  TGGTGCATGGATGAGCTGGTGAAGATGAAGAAACGTGCGGATAAAGGAAAGCTCCAAGTC  297

Query  318  ATTCCCATCTTCTACAAGGTTAGGGCAAGAGATGTGAGAGGACAGACCGGTGAGTTTGGT  377
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  298  ATTCCCATCTTCTACAAGGTTAGGGCAAGAGATGTGAGAGGACAGACCGGTGAGTTTGGT  357

Query  378  GACAA-GTTTTGGGCGCTTGCGAAGA-CTTCCCGAGTAGATCAGATCATGGAGTGGAAGG  435
            || || ||||||||||||||| |||| |||| |||| |||||||||||||||||||||||
Sbjct  358  GA-AACGTTTTGGGCGCTTGC-AAGAACTTCTCGAGGAGATCAGATCATGGAGTGGAAGG  415

Query  436  AAGCCCTAGAGTGTATTTCCAACAAGATGGGTCTGTCCTTGGGAGACAAAAGGTACT  492
            |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  416  AAGCGCTAGAGTGTATTTCCAACAAGATGGGCCTGTCCTTGGGAGACAAAAGGTACT  472



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24564497883


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5