BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925250
Length=918
Score E
Sequences producing significant alignments: (Bits) Value
AT1G57990.1 | Symbols: ATPUP18, PUP18 | purine permease 18 | ch... 979 0.0
AT1G57980.1 | Symbols: | Nucleotide-sugar transporter family p... 883 0.0
AT1G57943.1 | Symbols: ATPUP17, PUP17 | purine permease 17 | ch... 861 0.0
> AT1G57990.1 | Symbols: ATPUP18, PUP18 | purine permease 18 |
chr1:21441505-21442920 REVERSE LENGTH=1416
Length=1416
Score = 979 bits (530), Expect = 0.0
Identities = 695/774 (90%), Gaps = 14/774 (2%)
Strand=Plus/Plus
Query 147 TTATACTCAAACTATGGCGTCTTCACGCTGATTTCCGCGACCCAGTTGATCTTTACCG-T 205
|||||| |||||| ||||||||||||||||||||||||||| |||||||| ||||||| |
Sbjct 475 TTATACGCAAACTTTGGCGTCTTCACGCTGATTTCCGCGACTCAGTTGATATTTACCGCT 534
Query 206 GGTTTTCTCAGCCATTATCAACCGTTTCAAGTTTACCAGATGGATTATCATATCGATAAT 265
||||| |||||||||| |||||||| ||||| ||||||||||||||| ||||||||||
Sbjct 535 -ATTTTCGCAGCCATTATTAACCGTTTTAAGTTCACCAGATGGATTATCTTATCGATAAT 593
Query 266 CCTCACCATTTTGATATATGTTTTCGGTAGTCCTGAATTCGCAGGAGAGCCTGATGAAAA 325
| || ||||||||| ||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 594 CGGCAGCATTTTGATTTATGTTTTCGGTAGTCCTGAATTTGGAGGAGAGCCTGATGAAAA 653
Query 326 CGAAGAATTCTACGA-CATCCAAGCTTGGTTAACTTTTGCTGCTTCAGTTGCCTTCCCTT 384
||||||||||||| | ||||||||||||||||||||| |||||||||||||| ||| | |
Sbjct 654 CGAAGAATTCTAC-AGCATCCAAGCTTGGTTAACTTTCGCTGCTTCAGTTGCTTTCGCAT 712
Query 385 TATCTCCCTGTTTAAGCCAACTTGGGTTCGAGAAACTATTGGTGAAGACAAAGAGATATG 444
|||||| ||||||| ||||||| | ||||||||| | ||||| ||||||||||||||||
Sbjct 713 TATCTCTCTGTTTATTCCAACTTTGTTTCGAGAAAGTGTTGGTAAAGACAAAGAGATATG 772
Query 445 GTAACAAGAAAGTGTTTAGAATGGTCTTGGAGCTACAAATTTGTGTCTCTTTTGTTGCCT 504
|||||||||||||||||||||||||| | ||| | |||||||||||||||||||| ||
Sbjct 773 GTAACAAGAAAGTGTTTAGAATGGTCATAGAGATGCAAATTTGTGTCTCTTTTGTCGCAA 832
Query 505 CGGTTGTTTGTCTTGTGGGTTTGTTTGCGAGTGGCGAGTATGAGGAACTGAAAGGCGATA 564
||||||||||||| |||||||||||||||||||||||| || |||||||| |||||||||
Sbjct 833 CGGTTGTTTGTCTCGTGGGTTTGTTTGCGAGTGGCGAGAATAAGGAACTGCAAGGCGATA 892
Query 565 GCAAGAGGTTTAAGAAAGGGGAAACATATTACGTTCTT-AGTTTGGTTC-GGTTGGCTTT 622
|| | |||||||||||||| ||||| ||||||||| || ||||| | || ||||||| ||
Sbjct 893 GCCACAGGTTTAAGAAAGGAGAAACGTATTACGTT-TTGAGTTT-GATCGGGTTGGCATT 950
Query 623 GTCGTGGCAGGTTTGGTCGGTCGGGCTGATAGGTTTGGTGCTCTATGTTTCCGGTGTGTT 682
|||||||||||||||| ||||||||||||| ||||||||||| |||||||| ||||||||
Sbjct 951 GTCGTGGCAGGTTTGGGCGGTCGGGCTGATGGGTTTGGTGCTTTATGTTTCGGGTGTGTT 1010
Query 683 TGGTGATGTTGTTCATATGTGTACTTCACCACTTGTGGCTTTGTTTGTTGTCTTGGCGTT 742
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 1011 TGGCGATGTTGTTCATATGTGTACTTCACCACTTGTGGCTTTGTTTGTTGTGTTGGCATT 1070
Query 743 TGATTTTATGGATGATGAGTTTAGTTGGCCAAGGATTGGTACTTTGATAGCAACAGTTTT 802
|||||| ||||||||||||||||||||||| || |||||||||||||||||||||||| |
Sbjct 1071 TGATTTCATGGATGATGAGTTTAGTTGGCCTAGAATTGGTACTTTGATAGCAACAGTTGT 1130
Query 803 GGCTTTAGGATCTTACTTCTATACGCTGCACAAGAGAAACAAGAAGAAGATGGTGGAACT 862
||||||||||||||||||||| || ||||| |||||||||||||||||||||||||| ||
Sbjct 1131 GGCTTTAGGATCTTACTTCTACACTCTGCATAAGAGAAACAAGAAGAAGATGGTGGAGCT 1190
Query 863 TAACCAAAGAGAGAACTATAATATTGAAGTTTAGTCTATTATTATGTCAAATGT 916
| |||||| ||||||| | | |||||| ||||||||| | || |||||||||
Sbjct 1191 TTACCAAACAGAGAAC-A-A-TATTGACGTTTAGTCTCTCAT---GTCAAATGT 1238
> AT1G57980.1 | Symbols: | Nucleotide-sugar transporter family
protein | chr1:21439232-21440805 REVERSE LENGTH=1470
Length=1470
Score = 883 bits (478), Expect = 0.0
Identities = 668/759 (88%), Gaps = 15/759 (2%)
Strand=Plus/Plus
Query 147 TTATACTCAAACTATGGCGTCTTCACGCTGATTTCCGCGACCCAGTTGATCTTTACCGTG 206
|||||||||| ||||||| |||||| ||||||||| | | ||||||||||||||||| ||
Sbjct 512 TTATACTCAAGCTATGGCTTCTTCATGCTGATTTCAGGGTCCCAGTTGATCTTTACCTTG 571
Query 207 GTTTTCTCAGCCATTATCAACCGTTTCAAGTTTACCAGATGGATTATCATATCGATAATC 266
||||| |||| || || ||||||||||||||||| |||||||| |||||||||||| |
Sbjct 572 ATTTTCACAGCTATCATTAACCGTTTCAAGTTTACTAGATGGATCATCATATCGATAGTT 631
Query 267 CTCA-CCATTTTGATATATG-TTTTCGGTAGTCCTGAATTCGCAGGAGAGCCTGATGAAA 324
|||| | || ||| |||| |||| ||| |||||| ||| ||||||||||||||||||
Sbjct 632 CTCATTC-TTGTGAGCTATGCTTTT-GGTGGTCCTGTATTTTCAGGAGAGCCTGATGAAA 689
Query 325 ACGAAGAATTCTACGACATCCAAGCTTGGTTAACTTTTGCTGCTTCAGTTGCCTTCCCTT 384
| ||| | ||||||| ||||||||||||||||||||| |||||||||||||| ||| | |
Sbjct 690 ATGAACATTTCTACGGCATCCAAGCTTGGTTAACTTTCGCTGCTTCAGTTGCTTTCGCAT 749
Query 385 TATCTCCCTGTTTAAG-CCAACTTGGGTTCGAGAAACTATTGGTGAAGACAAAGAGATAT 443
|||||| |||||| || ||||||| | ||||||||||| |||||||||||||||||||||
Sbjct 750 TATCTCTCTGTTT-AGTCCAACTTAGTTTCGAGAAACTGTTGGTGAAGACAAAGAGATAT 808
Query 444 GGTAACAAGAAAGTGTTTAGAATGGTCTTGGAGCTACAAATTTGTGTCTCTTTTGTTGCC 503
||||||||||||||||||||||||||||| ||| | ||||| |||||||||| ||| |||
Sbjct 809 GGTAACAAGAAAGTGTTTAGAATGGTCTTAGAGATGCAAATATGTGTCTCTTCTGTCGCC 868
Query 504 TCGGTTGTTTGTCTTGTGGGTTTGTTTGCGAGTGGCGAGTATGAGGAACTGAAAGGCGAT 563
|||||||||||||| || ||||||||||||||||| |||||| |||| ||||||||||||
Sbjct 869 TCGGTTGTTTGTCTAGTTGGTTTGTTTGCGAGTGGTGAGTATAAGGAGCTGAAAGGCGAT 928
Query 564 AGCAAGAGGTTTAAGAAAGGGGAAACATATTACGTTCTTAGTTTGGTTCGG-TTGGCTTT 622
||| |||||||||||||||| ||||| ||||||||||| |||||||| ||| ||||||||
Sbjct 929 AGCGAGAGGTTTAAGAAAGGAGAAACGTATTACGTTCTGAGTTTGGT-CGGGTTGGCTTT 987
Query 623 GTCGTGGCAGGTTTGGTCGGTCGGGCTGATAGGTTTGGTGCTCTATGTTTCCG-GTGTGT 681
|||||||||||||||| ||||||||||||||||||||||||| |||||||| | |||| |
Sbjct 988 GTCGTGGCAGGTTTGGGCGGTCGGGCTGATAGGTTTGGTGCTTTATGTTTC-GAGTGTTT 1046
Query 682 TTGGTGATGTTGTTCATATGTGTACTTCACCACTTGTGGCTTTGT-TTGTTGTCTTGGCG 740
|| || || |||||||||||||| ||||||||||| ||||||| | ||||||| |||||
Sbjct 1047 TTAGTAATATTGTTCATATGTGTGCTTCACCACTTATGGCTTT-TATTGTTGTGTTGGCA 1105
Query 741 TTTGATTTTATGGATGATGAGTTTAGTTGGCCAAGGATTGGTACTTTGATAGCAACAGTT 800
||||||||||| |||||||| ||||||||||| || |||||| ||||||||| | ||||
Sbjct 1106 TTTGATTTTATCGATGATGATTTTAGTTGGCCTAGAATTGGTGCTTTGATAGGATCAGTA 1165
Query 801 TTGGCTTTAGGATCTTACTTCTATACGCTGCACAAGAGAAACAAGAAGAAGATGGTGGAA 860
||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||
Sbjct 1166 TTGGCTTTAGGATCTTACTTCTACACTCTGCACAAAAGAAACAAGAAGAAGATGGTGGAA 1225
Query 861 CTTAACCAAAGAGAGAACTATAATATTGAAGTTTAGTCT 899
|||||||||| |||||| || || ||||||||||||
Sbjct 1226 TTTAACCAAAGTGAGAACAATG-TA--GAAGTTTAGTCT 1261
Score = 209 bits (113), Expect = 3e-53
Identities = 135/146 (92%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 1 GATCTACAATACAAAGGAACATGGATGCAAGCTGTGATCCAAAACGCTGCGTTTCCAATT 60
||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct 305 GATCTACAATACAAAGGAACATGGATGCAAGCTCTGATCCAAAACGCTGCTTTTCCAATC 364
Query 61 CTCATCCCTCTCTTCTTCCTTTTCTCTTCACCAAAACAAAACCAAGAAACCAACAATACT 120
|||||||||||||||||| ||||| |||||||||||| ||||| ||||||| |||||||
Sbjct 365 CTCATCCCTCTCTTCTTCATTTTCCCTTCACCAAAACCAAACCCTGAAACCATCAATACT 424
Query 121 CGTTTCCTCTCCTTTCGTCTCATCTT 146
|| ||||||||| |||||||||||||
Sbjct 425 CGCTTCCTCTCCATTCGTCTCATCTT 450
> AT1G57943.1 | Symbols: ATPUP17, PUP17 | purine permease 17 |
chr1:21437602-21438889 REVERSE LENGTH=1197
Length=1197
Score = 861 bits (466), Expect = 0.0
Identities = 659/752 (88%), Gaps = 14/752 (2%)
Strand=Plus/Plus
Query 152 CTCAAACTATGGCGTCTTCACGCTGATTTCCGCGACCCAGTTGATCTTTACCG-TGGTTT 210
||||||||||||| ||||| | |||||||| | || |||||||| ||||||| | ||||
Sbjct 453 CTCAAACTATGGCATCTTCTCATTGATTTCCACAACACAGTTGATATTTACCGCT-GTTT 511
Query 211 TCTCAGCCATTATCAACCGTTTCAAGTTTACCAGATGGATTATCATATCGATAATCCTCA 270
| ||||||| || ||||||||||||||||| |||||||| |||||||||||| | ||||
Sbjct 512 TAACAGCCATCATTAACCGTTTCAAGTTTACTAGATGGATCATCATATCGATATTACTCA 571
Query 271 CCATTTTGATATATGTTTTCGGTAGTCCTGAATTCGCAGGAGAGCCTGATGAAAACGAAG 330
| ||| |||| || ||| |||||| |||||| || | |||| ||||| |||| |||||
Sbjct 572 CTATTGTGATTTACGTTCTCGGTACTCCTGACTTTGGAGGACAGCCTCATGACGGCGAAG 631
Query 331 AATTC---TACGACATCCAAGCTTGGTTAACTTT-TGCTGCTTCAGTTGCCTTCCCTTTA 386
||||| ||| ||||||||||||||||| |||| | ||||| || |||| ||| | |||
Sbjct 632 AATTCGGATACAACATCCAAGCTTGGTTAGCTTTCT-CTGCTACAATTGCTTTCTCATTA 690
Query 387 TCTCCCTGTTTAAGCCAACTTGGGTTCGAGAAACTATTGGTGAAGACAAAGAGATATGGT 446
|||| || |||| |||||| |||||||||||||| |||||||| ||||||||||||
Sbjct 691 TCTCTTTGCTTAATCCAACTCGGGTTCGAGAAACTCCAAGTGAAGACCAAGAGATATGGT 750
Query 447 AACAAGAAAGTGTTTAGAATGGTCTTGGAGCTACAAATTTGTGTCTCTTTTGTTGCCTCG 506
||| |||||||||||||||||||||| ||| | ||||| |||||| ||||||| ||||||
Sbjct 751 AACGAGAAAGTGTTTAGAATGGTCTTAGAGATGCAAATATGTGTCGCTTTTGTCGCCTCG 810
Query 507 GTTGTTTGTCTTGTGGGTTTGTTTGCGAGTGGCGAGTATGAGGAACTGAAAGGCGATAGC 566
||||||||||| ||||| ||||||||||||| ||||||| ||||||||||||||||||||
Sbjct 811 GTTGTTTGTCTCGTGGGCTTGTTTGCGAGTGACGAGTATAAGGAACTGAAAGGCGATAGC 870
Query 567 AAGAGGTTTAAGAAAGGGGAAACATATTACGTTCTTAGTTTGGTTCGG-TTGGCTTTGTC 625
||||||||||||||||||||||| ||||||||||| |||||||| ||| |||||||||||
Sbjct 871 AAGAGGTTTAAGAAAGGGGAAACGTATTACGTTCTGAGTTTGGT-CGGGTTGGCTTTGTC 929
Query 626 GTGGCAGGTTTGGTCGGTCGGGCTGATAGGTTTGGTGC-TCTATGTTTCCGGTGTGTTTG 684
||||||||||||| |||||||| ||||||||||||||| | |||||||| ||| | ||||
Sbjct 930 GTGGCAGGTTTGGGCGGTCGGGATGATAGGTTTGGTGCAT-TATGTTTCGGGTCTTTTTG 988
Query 685 GTGATGTTGTTCATATGTGTACTTCACCACTTGTGGCTTTGTTTGTTGTCTTGGCGTTTG 744
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||| ||||
Sbjct 989 GTGATGTTGTTCATATGTGTGCTTCACCATTTGTGGCTTTGTTTGTTGTCTTGGCATTTG 1048
Query 745 ATTTTATGGATGATGAGTTTAGTTGGCCAAGGATTGGTACTTTGATAGCAACAGTTTTGG 804
||||||||||||||| |||||||||||| || |||||| ||||||||| |||||||||||
Sbjct 1049 ATTTTATGGATGATGTGTTTAGTTGGCCTAGAATTGGTGCTTTGATAGGAACAGTTTTGG 1108
Query 805 CTTTAGGATCTTACTTCTATACGCTGCACAAGAGAAACAAGAAGAAGATGGTGGAACTTA 864
| ||||||||||||||||| || |||||||||||||||||||||||||||| ||||||||
Sbjct 1109 CGTTAGGATCTTACTTCTACACTCTGCACAAGAGAAACAAGAAGAAGATGGCGGAACTTA 1168
Query 865 ACCAAAGAGAGAACTATAATATTGAAGTTTAG 896
||||||| |||||| | | | |||||||||||
Sbjct 1169 ACCAAAGTGAGAAC-A-A-TGTTGAAGTTTAG 1197
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44859093271
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5