BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925251
Length=236
Score E
Sequences producing significant alignments: (Bits) Value
AT1G57980.1 | Symbols: | Nucleotide-sugar transporter family p... 268 1e-71
AT1G57943.1 | Symbols: ATPUP17, PUP17 | purine permease 17 | ch... 259 7e-69
AT1G57990.1 | Symbols: ATPUP18, PUP18 | purine permease 18 | ch... 200 5e-51
> AT1G57980.1 | Symbols: | Nucleotide-sugar transporter family
protein | chr1:21439232-21440805 REVERSE LENGTH=1470
Length=1470
Score = 268 bits (145), Expect = 1e-71
Identities = 206/233 (88%), Gaps = 13/233 (6%)
Strand=Plus/Plus
Query 8 ACCAGAGAAAACTTATGGAGATGAGCC-AAGCTTCTAAACAGACAACAATACATGAAGAA 66
||||||||||||| |||||||||| || ||||||| ||||| ||||||| ||||||||||
Sbjct 60 ACCAGAGAAAACTCATGGAGATGA-CCGAAGCTTCCAAACATACAACAACACATGAAGAA 118
Query 67 TCAGAACATGTTCAGAATCCAGAACCAGACCAAATCTTCAGTCC-AAGAAGATC-GTTGG 124
|||||||||||||||||||| |||||||||||| |||| || || ||| | | | ||||
Sbjct 119 TCAGAACATGTTCAGAATCCTGAACCAGACCAAGTCTTGAG-CCAAAG-ACAACTGTTGC 176
Query 125 AGCTCAATCAAAAGAAATGGTGGATCTCTGTTGC-GCTATGTCTTTTCTTAGTCCTGCTT 183
|||| ||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 177 AGCTAAATCAAAAGAAATGGTGGATCTCTGTT-CTAATATGTCTTTTCTTAGTCCTGCTT 235
Query 184 GGAGATTCTCTCGTCATGCGATGCTTCTCTTGAACTTCTTCTATGTTCAAGAC 236
||||||||||| ||||| | ||||||||||||||||||||||||||||||
Sbjct 236 GGAGATTCTCTTGTCAT---A--CTTCTCTTGAACTTCTTCTATGTTCAAGAC 283
> AT1G57943.1 | Symbols: ATPUP17, PUP17 | purine permease 17 |
chr1:21437602-21438889 REVERSE LENGTH=1197
Length=1197
Score = 259 bits (140), Expect = 7e-69
Identities = 191/214 (89%), Gaps = 9/214 (4%)
Strand=Plus/Plus
Query 22 ATGGAGATGAGCC-AAGCTTCTAAACAGACAACAATACATGAAGAATCAGAACATGTTCA 80
||||||||| || ||||||| ||||||||||||| |||||||||||||||||| |||||
Sbjct 1 ATGGAGATG-TCCAAAGCTTCCAAACAGACAACAAGACATGAAGAATCAGAACACGTTCA 59
Query 81 GAATCCAGAACCAGACCAAATCTTCAGTCCAAGAAGATCGTTGGAGCTCAATCAAAAGAA 140
|||||||||||||||||||||||| ||||||||||||||||||||||| || |||| |||
Sbjct 60 GAATCCAGAACCAGACCAAATCTTGAGTCCAAGAAGATCGTTGGAGCTAAAACAAA-GAA 118
Query 141 A-TGGTGGATCTCTGTTGCGCTATGTCTTTTCTTAGTCCTGCTTGGAGATTCTCTCGTCA 199
| ||||||||||||||| | ||||||||||||||||| | || ||||||||||||||||
Sbjct 119 AATGGTGGATCTCTGTTTCTTTATGTCTTTTCTTAGTCTTACTCGGAGATTCTCTCGTCA 178
Query 200 TGCGATGCTTCTCTTGAACTTCTTCTATGTTCAA 233
||| | | |||||||||||||||||||| |||
Sbjct 179 TGC--T--T-CTCTTGAACTTCTTCTATGTCCAA 207
> AT1G57990.1 | Symbols: ATPUP18, PUP18 | purine permease 18 |
chr1:21441505-21442920 REVERSE LENGTH=1416
Length=1416
Score = 200 bits (108), Expect = 5e-51
Identities = 188/223 (84%), Gaps = 19/223 (9%)
Strand=Plus/Plus
Query 15 AAAACTTATGGAGATGAGCC-AAGCTTCTAAACAGACAACAATACATGAAGAATCAGAAC 73
|||| | |||||||||| || ||||||| ||||||||||| | || |||| || |
Sbjct 42 AAAAATCATGGAGATGA-CCGAAGCTTCCAAACAGACAAC-A-GCA-GAAG-----GATC 92
Query 74 ATGTTCAGAATCCAGAACCAGACCAAATCTTCAGTCCAAGAAGATCGTTGGAGCTCAATC 133
| | || ||||||||||||||||||||||| ||||| ||||||||||||||||| || |
Sbjct 93 A-G--CA-AATCCAGAACCAGACCAAATCTTGAGTCCGAGAAGATCGTTGGAGCTAAAAC 148
Query 134 AAAAGAAATGGTGGATCTCTGTTGCGCTATGTCTTTTCTTAGTCCTGCTTGGAGATTCTC 193
||||||||||||||||||||||| | ||||| ||||||||||| |||| ||||||||||
Sbjct 149 AAAAGAAATGGTGGATCTCTGTTTCTTTATGTATTTTCTTAGTCTTGCTCGGAGATTCTC 208
Query 194 TCGTCATGCGATGCTTCTCTTGAACTTCTTCTATGTTCAAGAC 236
| ||||||| | | |||||||||||||||||||||||||||
Sbjct 209 TAGTCATGC--T--T-CTCTTGAACTTCTTCTATGTTCAAGAC 246
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10656762788
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5