BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925252
Length=901
Score E
Sequences producing significant alignments: (Bits) Value
AT1G72330.3 | Symbols: ALAAT2 | alanine aminotransferase 2 | ch... 361 8e-99
AT1G17290.1 | Symbols: AlaAT1 | alanine aminotransferas | chr1:... 237 1e-61
> AT1G72330.3 | Symbols: ALAAT2 | alanine aminotransferase 2 |
chr1:27233475-27236789 FORWARD LENGTH=2042
Length=2042
Score = 361 bits (195), Expect = 8e-99
Identities = 233/252 (92%), Gaps = 0/252 (0%)
Strand=Plus/Plus
Query 435 GTTCACATGATGATGCAACTTCTCATAAGCTCAGAGAAAGATGGAATTCTCTGCCTGATT 494
|||||||||||||||||||||||| | ||||||||||||||||| ||||| | || ||||
Sbjct 829 GTTCACATGATGATGCAACTTCTCTTGAGCTCAGAGAAAGATGGTATTCTTTCCCCGATT 888
Query 495 CCTCAGAATCCATTGTATTCTGCTTCAATTACCCTCCATGGTGGATCTCTGGTTCCGTAC 554
|||||| |||||||||| || ||||||||| |||| |||||||||||| |||||||||||
Sbjct 889 CCTCAGTATCCATTGTACTCGGCTTCAATTGCCCTTCATGGTGGATCTTTGGTTCCGTAC 948
Query 555 TATCTTGATGAAGCAACAGGATGGGGACTGGAAATATCTAACGTTAAGAAGCAACTGGAG 614
||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |||
Sbjct 949 TATCTTGATGAAGCAACAGGATGGGGACTGGAAATATCTGACCTTAAGAAGCAACTAGAG 1008
Query 615 GAAGCTAGGTCGAAGGGCATCACTGTAAGAGCCTTGGTTGTCATAAACCCCGGTAACCCA 674
||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 1009 GAAGCTAGGTCCAAGGGCATCTCTGTAAGGGCCTTGGTTGTCATAAACCCCGGTAACCCA 1068
Query 675 ACAGGGCAGGTT 686
|| |||||||||
Sbjct 1069 ACTGGGCAGGTT 1080
Score = 287 bits (155), Expect = 1e-76
Identities = 184/198 (93%), Gaps = 1/198 (1%)
Strand=Plus/Plus
Query 675 ACAGGGCAGGTTACCGGATTCACTCCTGATGTCAGAGAACAAATATACAAAATGGCTTCT 734
||| || ||||||| ||||||||| ||||||| |||||||| ||||||||||||||||||
Sbjct 1307 ACATGG-AGGTTACTGGATTCACTTCTGATGTAAGAGAACAGATATACAAAATGGCTTCT 1365
Query 735 ATTAATCTTTGTTCTAACATCTCTGGTCAAATTCTTGCTAGCCTTATCATGAGCCCACCC 794
| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1366 GTGAATCTTTGTTCTAACATCTCTGGTCAAATTCTTGCTAGCCTTGTCATGAGCCCACCC 1425
Query 795 AAGCCTGGTGATGACTCATATGACTCATACATGGCCGAAAGAGATGGGATTCTCTCGTCA 854
||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||
Sbjct 1426 AAGCCTGGTGATGACTCATATGACTCATACATGGCAGAAAGAGATGGAATTCTCTCATCC 1485
Query 855 ATGGCTAGACGTGCAAAG 872
||||||| ||||||||||
Sbjct 1486 ATGGCTAAACGTGCAAAG 1503
> AT1G17290.1 | Symbols: AlaAT1 | alanine aminotransferas | chr1:5922630-5926400
FORWARD LENGTH=2080
Length=2080
Score = 237 bits (128), Expect = 1e-61
Identities = 176/199 (88%), Gaps = 3/199 (2%)
Strand=Plus/Plus
Query 675 ACAGGGCAGGTTACCGGATTCACTCCTGATGTCAGAGAACAAATATACAAAATGGCTTCT 734
||| || ||||||| ||||||||| ||||||| ||||| || ||||||||||||||||||
Sbjct 1256 ACATGG-AGGTTACTGGATTCACTTCTGATGTAAGAGAGCAGATATACAAAATGGCTTCT 1314
Query 735 ATTAATCTTTGTTCTAACATCTCTGGTCAAATTCTTGCTAGCCTTATCATGAGCCCACCC 794
| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1315 GTGAATCTTTGTTCCAACATCTCTGGTCAAATTCTTGCTAGCCTCATCATGAGCCCACCC 1374
Query 795 AAGCCTGGTGATGACTCATATGACTCATACATGGCCGA-AAGAGATGGGATTCTCTCGTC 853
||||||||||| ||||| ||||| |||||||| || || ||| ||||| |||||||| ||
Sbjct 1375 AAGCCTGGTGACGACTCCTATGAATCATACATAGCAGAGAAG-GATGGAATTCTCTCATC 1433
Query 854 AATGGCTAGACGTGCAAAG 872
|||| ||||||||||||
Sbjct 1434 TTTGGCAAGACGTGCAAAG 1452
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44005112772
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5