BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg925253

Length=317
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G27970.2 | Symbols: NTF2B | nuclear transport factor 2B | ch...   189    1e-47


> AT1G27970.2 | Symbols: NTF2B | nuclear transport factor 2B | 
chr1:9746811-9748467 FORWARD LENGTH=676
Length=676

 Score =  189 bits (102),  Expect = 1e-47
 Identities = 116/123 (94%), Gaps = 0/123 (0%)
 Strand=Plus/Plus

Query  42   CAGTGCAAGCATGACATCTCTACCGTTGATTGTCAGCCTTCTGGTCCCGCTTCCGGTATG  101
            |||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct  294  CAGTGCAAGCATCACATCTCCACCGTTGATTGTCAGCCTTCTGGTCCTGCTTCCGGTATG  353

Query  102  CTTGTTTTCGTCTCCGGTAATCTCCAGCTCGCCGGCGAAGAGCACGCTCTTAAGTTCAGC  161
            || |||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||
Sbjct  354  CTCGTTTTCGTCTCCGGTAATCTCCAGCTCGCCGGAGAAGAACACGCTCTCAAGTTCAGC  413

Query  162  CAG  164
            |||
Sbjct  414  CAG  416



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14728450457


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5