BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg925254 Length=1202 Score E Sequences producing significant alignments: (Bits) Value AT3G13680.1 | Symbols: | F-box and associated interaction doma... 246 3e-64 AT3G20030.1 | Symbols: | F-box and associated interaction doma... 100 3e-20 AT3G13820.1 | Symbols: | F-box and associated interaction doma... 76.8 4e-13 AT1G25211.1 | Symbols: | F-box family protein | chr1:8835386-8... 60.2 4e-08 > AT3G13680.1 | Symbols: | F-box and associated interaction domains-containing protein | chr3:4477289-4478721 REVERSE LENGTH=1433 Length=1433 Score = 246 bits (133), Expect = 3e-64 Identities = 577/776 (74%), Gaps = 92/776 (12%) Strand=Plus/Plus Query 281 CTATGCGTCCTTGAGGACAACTCGA-GGCTTTTGGTATGGAATCC-------GGG-AAAC 331 |||||| || || |||||||| | | |||| ||||||||||| || ||| |||| Sbjct 322 CTATGCATCATTAAGGACAACAC-AGGGCTCTTGGTATGGAACCCTTATTTGGGGCAAAC 380 Query 332 AAAGTGGATCCAACCGAGAGATA-AATCA-C-GCGGGCAAGA-CGCGTATGCTCTCGGAT 387 | ||||||||| |||||| | | ||| | | | | |||| | ||||||||| |||| Sbjct 381 TAGGTGGATCCATCCGAGA-A-ACAATTACCAGATAG-AAGATAG-GTATGCTCTTGGAT 436 Query 388 ATGACAAGAAGAAGCGTACCCACAAAATCTTGAGGAATTTCGATTT-TCCTCTAAGC-GG 445 ||| | || || |||| ||||||||| ||||||| ||||||||| | || |||| | Sbjct 437 ATG---ATAACAACCGTAACCACAAAATATTGAGGATTTTCGATTTGT-ATCCAAGCAGC 492 Query 446 AAGAGAGTATGTTATAGTATACGAAATCTACGATTTTAGCTCTAATTCATGGAAGGTTCT 505 || | || | || | | |||||| |||||||||||||||||||||||||||||||||| Sbjct 493 AACCGCGT-T-TT-T-GGGTACGAAGTCTACGATTTTAGCTCTAATTCATGGAAGGTTCT 548 Query 506 TGATGTCCCTACGGACGACTGCCATATATCT-TCTCATAT-CAACGGCGCGTCTTTGAA- 562 ||||||| | | || | || ||||| | |||||| | | |||||||||||||| Sbjct 549 TGATGTCATTCCTGA-G--TGGGATATA-CAGTCTCATTTTCGT-GGCGCGTCTTTGAAA 603 Query 563 GGGAAACACTTATTTTCTTGC--AA--G---GAAACAC-GG-AG---TAAC--CAA-AA- 606 ||||| ||||||||| ||| || | |||||| || || ||| ||| || Sbjct 604 GGGAATG-CTTATTTTCCTGCGCAAAAGAAAGAAACAGTGGGAGGAATAAAGACAATAAA 662 Query 607 TACTTGAAGATCTTTTGCTATGTTTTGATTTTACAACAGAGAGCTTTCG---GCCTCTGC 663 || |||||||| || | || ||||| |||||||||| ||||| ||| | |||||||| Sbjct 663 TA-TTGAAGATGTTCTACTTTGTTTCGATTTTACAAGGGAGAGATTTGGACCGCCTCTGC 721 Query 664 CTCTGCCGTTTCGCGACACTTTCAGTGATGGAGGAGATTTT-GTGTCTCTATCTTGTGTT 722 | |||||||||| || ||| || ||| || | |||| ||||||||| |||||||| Sbjct 722 CACTGCCGTTTC---ACTCTTACA---ATGCAG-ACTTTTTTGTGTCTCTAGCTTGTGTT 774 Query 723 AAAGAAGAACAGCTCGCGGTCTTATATCAACGCTATTGGAACCCACCT-ACGGCAATCGA 781 | ||||| |||||||| || ||||||||||||| || | | | | | ||||||| Sbjct 775 AGGGAAGAGCAGCTCGCTGTGTTATATCAACGCTGGGGGG-C--ATTTGA-GACAATCGA 830 Query 782 GATCTT-TGTTACGAATAAGATTGATGATCTAAATGCGGTGTCGTGGATCAAGTTTTTAA 840 ||| || |||||| |||||||||||| | || | |||| ||||||| ||||||||| | Sbjct 831 GAT-TTGTGTTACAAATAAGATTGATCC-C-AA-TACGGTTTCGTGGAGCAAGTTTTTGA 886 Query 841 -AACTGTCCACCAGTTTTTACGGTCTGTG--TTTGTCTGGGAGTTTTTTCATTGACCAAG 897 ||| |||||| ||||| |||| || ||| |||||||| ||||||||||| | | Sbjct 887 TAAC-GTCCACTGGTTTTC-CGGT-TGACACTTTTTCTGGGAGCTTTTTCATTGATGAGG 943 Query 898 AGAAGAAAGTTGCTGTGGTTTTCGATCTAGAGTTACCTACCAATGACA-ACAGTCGTCGT 956 |||||||||||||||||||||| ||| |||| | | || || || || | | | Sbjct 944 AGAAGAAAGTTGCTGTGGTTTTTGATTTAGA-T-AGATAT-AA--ACCGACTGA-GAC-- 995 Query 957 CGTCGTCGCTACCAAACAGCTCACATCATTGGAGAAGATGGATACTTGAAATCTGT 1012 | | |||||||||||| || | | || |||||| |||||| |||||| |||||||| Sbjct 996 C-T-GTCGCTACCAAATAGTTTATATTATTGGACAAGATGAATACTTCAAATCTGT 1049 > AT3G20030.1 | Symbols: | F-box and associated interaction domains-containing protein | chr3:6990254-6991462 FORWARD LENGTH=1209 Length=1209 Score = 100 bits (54), Expect = 3e-20 Identities = 175/229 (76%), Gaps = 26/229 (11%) Strand=Plus/Plus Query 374 GTATGCTCTCGGATATGACAAGAAGAAGCGTACCCACAAAATCTTGAGGAATTTC--G-A 430 ||||||| ||||||| ||| || || |||| ||||||||||||||| |||| | | Sbjct 432 GTATGCTATCGGATACGAC---AATAACCGTAAACACAAAATCTTGAGG--TTTCTGGAA 486 Query 431 T-TTTC--CTCTAAGC-GGAAG-AGAGTATGTTATAGTA-TACGAAATCTACGATTTTAG 484 | || | || ||| | |||| | || || || | | | |||||||||||||||||||| Sbjct 487 TATTACAACTTTAA-CATGAAGCACAG-AT-TTCTTG-AGTACGAAATCTACGATTTTAG 542 Query 485 CTCTAATTCATGGAAGGTTCTTGATGTCCCTACGGACGACTGCCATATATCTTCTCATAT 544 |||||||||||||| |||||||||| || || | || || | ||| ||| ||| Sbjct 543 CTCTAATTCATGGAGGGTTCTTGATATCGCTCCC--CGT-TGGGAAATAGAGTCT--TAT 597 Query 545 CAACG-GC-GCGTCTTTGAAGGGAAACACTTATTTTCTTGC-AAGGAAA 590 ||||| | ||||||||||| ||||||||||| ||| |||| ||||||| Sbjct 598 CAACGTGGAGCGTCTTTGAAAGGAAACACTTACTTTATTGCCAAGGAAA 646 > AT3G13820.1 | Symbols: | F-box and associated interaction domains-containing protein | chr3:4549616-4550863 FORWARD LENGTH=1248 Length=1248 Score = 76.8 bits (41), Expect = 4e-13 Identities = 57/65 (88%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 964 GCTACCAAACAGCTCACATCATTGGAGAAGATGGATACTTGAAATCTGTTACTATCAGAG 1023 ||||||||| |||||||||||||||||||||||||||| |||||| ||| | ||| || Sbjct 1025 GCTACCAAAAAGCTCACATCATTGGAGAAGATGGATACCTGAAATGTGTGAATATGGGAA 1084 Query 1024 GAGCT 1028 ||||| Sbjct 1085 GAGCT 1089 > AT1G25211.1 | Symbols: | F-box family protein | chr1:8835386-8837007 FORWARD LENGTH=1622 Length=1622 Score = 60.2 bits (32), Expect = 4e-08 Identities = 41/45 (91%), Gaps = 2/45 (4%) Strand=Plus/Plus Query 885 TTCATTGACCAAGA-GAAGAAAGTTGCTGTGGTTTTCGATCTAGA 928 ||||||||| | || | |||||||||||||||||||||||||||| Sbjct 1049 TTCATTGACGAGGATG-AGAAAGTTGCTGTGGTTTTCGATCTAGA 1092 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 59035840920 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5