BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925254
Length=1202
Score E
Sequences producing significant alignments: (Bits) Value
AT3G13680.1 | Symbols: | F-box and associated interaction doma... 246 3e-64
AT3G20030.1 | Symbols: | F-box and associated interaction doma... 100 3e-20
AT3G13820.1 | Symbols: | F-box and associated interaction doma... 76.8 4e-13
AT1G25211.1 | Symbols: | F-box family protein | chr1:8835386-8... 60.2 4e-08
> AT3G13680.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:4477289-4478721 REVERSE LENGTH=1433
Length=1433
Score = 246 bits (133), Expect = 3e-64
Identities = 577/776 (74%), Gaps = 92/776 (12%)
Strand=Plus/Plus
Query 281 CTATGCGTCCTTGAGGACAACTCGA-GGCTTTTGGTATGGAATCC-------GGG-AAAC 331
|||||| || || |||||||| | | |||| ||||||||||| || ||| ||||
Sbjct 322 CTATGCATCATTAAGGACAACAC-AGGGCTCTTGGTATGGAACCCTTATTTGGGGCAAAC 380
Query 332 AAAGTGGATCCAACCGAGAGATA-AATCA-C-GCGGGCAAGA-CGCGTATGCTCTCGGAT 387
| ||||||||| |||||| | | ||| | | | | |||| | ||||||||| ||||
Sbjct 381 TAGGTGGATCCATCCGAGA-A-ACAATTACCAGATAG-AAGATAG-GTATGCTCTTGGAT 436
Query 388 ATGACAAGAAGAAGCGTACCCACAAAATCTTGAGGAATTTCGATTT-TCCTCTAAGC-GG 445
||| | || || |||| ||||||||| ||||||| ||||||||| | || |||| |
Sbjct 437 ATG---ATAACAACCGTAACCACAAAATATTGAGGATTTTCGATTTGT-ATCCAAGCAGC 492
Query 446 AAGAGAGTATGTTATAGTATACGAAATCTACGATTTTAGCTCTAATTCATGGAAGGTTCT 505
|| | || | || | | |||||| ||||||||||||||||||||||||||||||||||
Sbjct 493 AACCGCGT-T-TT-T-GGGTACGAAGTCTACGATTTTAGCTCTAATTCATGGAAGGTTCT 548
Query 506 TGATGTCCCTACGGACGACTGCCATATATCT-TCTCATAT-CAACGGCGCGTCTTTGAA- 562
||||||| | | || | || ||||| | |||||| | | ||||||||||||||
Sbjct 549 TGATGTCATTCCTGA-G--TGGGATATA-CAGTCTCATTTTCGT-GGCGCGTCTTTGAAA 603
Query 563 GGGAAACACTTATTTTCTTGC--AA--G---GAAACAC-GG-AG---TAAC--CAA-AA- 606
||||| ||||||||| ||| || | |||||| || || ||| ||| ||
Sbjct 604 GGGAATG-CTTATTTTCCTGCGCAAAAGAAAGAAACAGTGGGAGGAATAAAGACAATAAA 662
Query 607 TACTTGAAGATCTTTTGCTATGTTTTGATTTTACAACAGAGAGCTTTCG---GCCTCTGC 663
|| |||||||| || | || ||||| |||||||||| ||||| ||| | ||||||||
Sbjct 663 TA-TTGAAGATGTTCTACTTTGTTTCGATTTTACAAGGGAGAGATTTGGACCGCCTCTGC 721
Query 664 CTCTGCCGTTTCGCGACACTTTCAGTGATGGAGGAGATTTT-GTGTCTCTATCTTGTGTT 722
| |||||||||| || ||| || ||| || | |||| ||||||||| ||||||||
Sbjct 722 CACTGCCGTTTC---ACTCTTACA---ATGCAG-ACTTTTTTGTGTCTCTAGCTTGTGTT 774
Query 723 AAAGAAGAACAGCTCGCGGTCTTATATCAACGCTATTGGAACCCACCT-ACGGCAATCGA 781
| ||||| |||||||| || ||||||||||||| || | | | | | |||||||
Sbjct 775 AGGGAAGAGCAGCTCGCTGTGTTATATCAACGCTGGGGGG-C--ATTTGA-GACAATCGA 830
Query 782 GATCTT-TGTTACGAATAAGATTGATGATCTAAATGCGGTGTCGTGGATCAAGTTTTTAA 840
||| || |||||| |||||||||||| | || | |||| ||||||| ||||||||| |
Sbjct 831 GAT-TTGTGTTACAAATAAGATTGATCC-C-AA-TACGGTTTCGTGGAGCAAGTTTTTGA 886
Query 841 -AACTGTCCACCAGTTTTTACGGTCTGTG--TTTGTCTGGGAGTTTTTTCATTGACCAAG 897
||| |||||| ||||| |||| || ||| |||||||| ||||||||||| | |
Sbjct 887 TAAC-GTCCACTGGTTTTC-CGGT-TGACACTTTTTCTGGGAGCTTTTTCATTGATGAGG 943
Query 898 AGAAGAAAGTTGCTGTGGTTTTCGATCTAGAGTTACCTACCAATGACA-ACAGTCGTCGT 956
|||||||||||||||||||||| ||| |||| | | || || || || | | |
Sbjct 944 AGAAGAAAGTTGCTGTGGTTTTTGATTTAGA-T-AGATAT-AA--ACCGACTGA-GAC-- 995
Query 957 CGTCGTCGCTACCAAACAGCTCACATCATTGGAGAAGATGGATACTTGAAATCTGT 1012
| | |||||||||||| || | | || |||||| |||||| |||||| ||||||||
Sbjct 996 C-T-GTCGCTACCAAATAGTTTATATTATTGGACAAGATGAATACTTCAAATCTGT 1049
> AT3G20030.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:6990254-6991462 FORWARD LENGTH=1209
Length=1209
Score = 100 bits (54), Expect = 3e-20
Identities = 175/229 (76%), Gaps = 26/229 (11%)
Strand=Plus/Plus
Query 374 GTATGCTCTCGGATATGACAAGAAGAAGCGTACCCACAAAATCTTGAGGAATTTC--G-A 430
||||||| ||||||| ||| || || |||| ||||||||||||||| |||| | |
Sbjct 432 GTATGCTATCGGATACGAC---AATAACCGTAAACACAAAATCTTGAGG--TTTCTGGAA 486
Query 431 T-TTTC--CTCTAAGC-GGAAG-AGAGTATGTTATAGTA-TACGAAATCTACGATTTTAG 484
| || | || ||| | |||| | || || || | | | ||||||||||||||||||||
Sbjct 487 TATTACAACTTTAA-CATGAAGCACAG-AT-TTCTTG-AGTACGAAATCTACGATTTTAG 542
Query 485 CTCTAATTCATGGAAGGTTCTTGATGTCCCTACGGACGACTGCCATATATCTTCTCATAT 544
|||||||||||||| |||||||||| || || | || || | ||| ||| |||
Sbjct 543 CTCTAATTCATGGAGGGTTCTTGATATCGCTCCC--CGT-TGGGAAATAGAGTCT--TAT 597
Query 545 CAACG-GC-GCGTCTTTGAAGGGAAACACTTATTTTCTTGC-AAGGAAA 590
||||| | ||||||||||| ||||||||||| ||| |||| |||||||
Sbjct 598 CAACGTGGAGCGTCTTTGAAAGGAAACACTTACTTTATTGCCAAGGAAA 646
> AT3G13820.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:4549616-4550863 FORWARD LENGTH=1248
Length=1248
Score = 76.8 bits (41), Expect = 4e-13
Identities = 57/65 (88%), Gaps = 0/65 (0%)
Strand=Plus/Plus
Query 964 GCTACCAAACAGCTCACATCATTGGAGAAGATGGATACTTGAAATCTGTTACTATCAGAG 1023
||||||||| |||||||||||||||||||||||||||| |||||| ||| | ||| ||
Sbjct 1025 GCTACCAAAAAGCTCACATCATTGGAGAAGATGGATACCTGAAATGTGTGAATATGGGAA 1084
Query 1024 GAGCT 1028
|||||
Sbjct 1085 GAGCT 1089
> AT1G25211.1 | Symbols: | F-box family protein | chr1:8835386-8837007
FORWARD LENGTH=1622
Length=1622
Score = 60.2 bits (32), Expect = 4e-08
Identities = 41/45 (91%), Gaps = 2/45 (4%)
Strand=Plus/Plus
Query 885 TTCATTGACCAAGA-GAAGAAAGTTGCTGTGGTTTTCGATCTAGA 928
||||||||| | || | ||||||||||||||||||||||||||||
Sbjct 1049 TTCATTGACGAGGATG-AGAAAGTTGCTGTGGTTTTCGATCTAGA 1092
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59035840920
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5