BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg925257

Length=329
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G27640.1 | Symbols:  | Transducin/WD40 repeat-like superfami...   231    2e-60


> AT3G27640.1 | Symbols:  | Transducin/WD40 repeat-like superfamily 
protein | chr3:10232248-10235621 FORWARD LENGTH=1821
Length=1821

 Score =  231 bits (125),  Expect = 2e-60
 Identities = 146/156 (94%), Gaps = 2/156 (1%)
 Strand=Plus/Plus

Query  88   ATCTTCTTGTATCTGGTTC-A-AGATGGATGTTTTGCGTTGTTGGATTTAATATGTAAAA  145
            ||||||||||||||||||| | |||||||||||||||||||| |||||||| ||||||||
Sbjct  610  ATCTTCTTGTATCTGGTTCAAGAGATGGATGTTTTGCGTTGTGGGATTTAAGATGTAAAA  669

Query  146  GTAGCTCTCACAAAGAGGAATTTTGTATCAACTCTATTGGGATGGTTAAAGGATCTCATC  205
            |||||||||| ||||||||||||||||||||||||| ||| |||||||||||| ||||||
Sbjct  670  GTAGCTCTCATAAAGAGGAATTTTGTATCAACTCTACTGGCATGGTTAAAGGAGCTCATC  729

Query  206  AATCTCCTCTTTCAAAACGAATCAGACGTCGCAAGG  241
             |||||| ||||||||||||||||||||||||||||
Sbjct  730  TATCTCCACTTTCAAAACGAATCAGACGTCGCAAGG  765



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15331663445


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5