BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925260
Length=383
Score E
Sequences producing significant alignments: (Bits) Value
AT2G44470.3 | Symbols: BGLU29 | beta glucosidase 29 | chr2:1835... 226 1e-58
> AT2G44470.3 | Symbols: BGLU29 | beta glucosidase 29 | chr2:18354186-18358679
FORWARD LENGTH=2054
Length=2054
Score = 226 bits (122), Expect = 1e-58
Identities = 188/219 (86%), Gaps = 8/219 (4%)
Strand=Plus/Plus
Query 32 GCATTTACATCCGGTGATTTACGGAGATTATCCTGAAATAATGAAAAAACATGTTGGGCA 91
||||||| |||||||||||||||||||||||||||||| ||||||||| ||||| || |
Sbjct 960 GCATTTAAATCCGGTGATTTACGGAGATTATCCTGAAACAATGAAAAAGCATGTCGGAAA 1019
Query 92 TAAGCTC-CCTTCTTTCACACCAGAACAATCAAAGATGTTGATAAACTCATTC-GATTTC 149
|| | | ||| |||||||||||||||||||||||||||| ||||| |||| | ||||||
Sbjct 1020 TA-GATTACCTGCTTTCACACCAGAACAATCAAAGATGTTAATAAATTCAT-CAGATTTC 1077
Query 150 ATTGGAATAAACTATTATAGCGCT-CGA-TACACCGCTCATCTTCCTCACATTGATCCTG 207
|||||| |||||||||||||| | | | | |||||||||||| ||||| || |||| |
Sbjct 1078 ATTGGAGTAAACTATTATAGCA-TAC-ACTTCACCGCTCATCTCCCTCATATCGATCATA 1135
Query 208 GTCGAGCTCGATTCAGAACTGATCAACATTTTGAGGAGA 246
|||| ||||||||||||||||||| ||||||||| |||
Sbjct 1136 CTCGACCTCGATTCAGAACTGATCACCATTTTGAGAAGA 1174
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18046121891
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5