BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg925264

Length=660
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G57850.1 | Symbols:  | Toll-Interleukin-Resistance (TIR) dom...   320    1e-86


> AT1G57850.1 | Symbols:  | Toll-Interleukin-Resistance (TIR) domain 
family protein | chr1:21426690-21427349 FORWARD LENGTH=477
Length=477

 Score =  320 bits (173),  Expect = 1e-86
 Identities = 349/434 (80%), Gaps = 12/434 (3%)
 Strand=Plus/Plus

Query  34   AGTATTCTTCAATTACAGAGGTGCGGAGCTGCGTTACAGCTTCGTCAGCCACC-TCAGTG  92
            ||||||| ||| || | |||| |   || |||| |||||||| |||||||||| ||  ||
Sbjct  39   AGTATTCCTCAGTTTCCGAGGAGATCAGTTGCGCTACAGCTTTGTCAGCCACCTTC-TTG  97

Query  93   ATGCCTTTGAGAGACATGGTATCAACT-TCTTCCTAGACAATCATGAACTGAGGGGCAAA  151
            | ||||||||||||||||| |||   | | ||  |||||||  | || || ||||| |||
Sbjct  98   ACGCCTTTGAGAGACATGGAATCTTGTGT-TTTGTAGACAAAGACGAGCTAAGGGG-AAA  155

Query  152  GATCTTG-CAAATCTCTTTGTGCGAATCGAAGAGTCGAGGATCGCACTAGCCATCTTCTC  210
             | | || |||| || |||||  | ||  ||||||||| |||||||||||  ||||||||
Sbjct  156  AACCATGACAAACCTTTTTGTAAGGATTAAAGAGTCGAAGATCGCACTAGTTATCTTCTC  215

Query  211  CACAAGATATGCAGAGTCGAGTTGGTGTATGGATGAGCTTGTGAAAATGAAGAAATGTGT  270
             |  || ||||| |||||||||||||| ||||||||||| ||||| ||||||||| ||| 
Sbjct  216  TAGTAGGTATGCGGAGTCGAGTTGGTGCATGGATGAGCTGGTGAAGATGAAGAAACGTGC  275

Query  271  GGATAAAGGAAAGCTCCAAGTCATTCCTATCTTTTACAAGATTAGGGCAAGAGATGTGAG  330
            ||||||||||||||||||||||||||| ||||| |||||| |||||||||||||||||||
Sbjct  276  GGATAAAGGAAAGCTCCAAGTCATTCCCATCTTCTACAAGGTTAGGGCAAGAGATGTGAG  335

Query  331  AGGACAGACAGGAAAGTTTGGTGACAAA-TTTTGGGAGCTAGCAA-AGGTTTCTCGTGGA  388
            ||||||||| ||  |||||||||| ||  ||||||| ||| |||| |  || |||| |||
Sbjct  336  AGGACAGACCGGTGAGTTTGGTGA-AACGTTTTGGGCGCTTGCAAGAACTT-CTCGAGGA  393

Query  389  GATAAGATCAAGAAGTGGAAGGATGCTTTAGAATGTATCACCGGGAAGATGGGTTTGTCC  448
            ||| |||||| | |||||||||| ||  |||| |||||  ||   ||||||||  |||||
Sbjct  394  GATCAGATCATGGAGTGGAAGGAAGCGCTAGAGTGTATTTCCAACAAGATGGGCCTGTCC  453

Query  449  TTGGGA-A-AAAAG  460
            |||||| | |||||
Sbjct  454  TTGGGAGACAAAAG  467



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 31898683345


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5