BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg925264 Length=660 Score E Sequences producing significant alignments: (Bits) Value AT1G57850.1 | Symbols: | Toll-Interleukin-Resistance (TIR) dom... 320 1e-86 > AT1G57850.1 | Symbols: | Toll-Interleukin-Resistance (TIR) domain family protein | chr1:21426690-21427349 FORWARD LENGTH=477 Length=477 Score = 320 bits (173), Expect = 1e-86 Identities = 349/434 (80%), Gaps = 12/434 (3%) Strand=Plus/Plus Query 34 AGTATTCTTCAATTACAGAGGTGCGGAGCTGCGTTACAGCTTCGTCAGCCACC-TCAGTG 92 ||||||| ||| || | |||| | || |||| |||||||| |||||||||| || || Sbjct 39 AGTATTCCTCAGTTTCCGAGGAGATCAGTTGCGCTACAGCTTTGTCAGCCACCTTC-TTG 97 Query 93 ATGCCTTTGAGAGACATGGTATCAACT-TCTTCCTAGACAATCATGAACTGAGGGGCAAA 151 | ||||||||||||||||| ||| | | || ||||||| | || || ||||| ||| Sbjct 98 ACGCCTTTGAGAGACATGGAATCTTGTGT-TTTGTAGACAAAGACGAGCTAAGGGG-AAA 155 Query 152 GATCTTG-CAAATCTCTTTGTGCGAATCGAAGAGTCGAGGATCGCACTAGCCATCTTCTC 210 | | || |||| || ||||| | || ||||||||| ||||||||||| |||||||| Sbjct 156 AACCATGACAAACCTTTTTGTAAGGATTAAAGAGTCGAAGATCGCACTAGTTATCTTCTC 215 Query 211 CACAAGATATGCAGAGTCGAGTTGGTGTATGGATGAGCTTGTGAAAATGAAGAAATGTGT 270 | || ||||| |||||||||||||| ||||||||||| ||||| ||||||||| ||| Sbjct 216 TAGTAGGTATGCGGAGTCGAGTTGGTGCATGGATGAGCTGGTGAAGATGAAGAAACGTGC 275 Query 271 GGATAAAGGAAAGCTCCAAGTCATTCCTATCTTTTACAAGATTAGGGCAAGAGATGTGAG 330 ||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||| Sbjct 276 GGATAAAGGAAAGCTCCAAGTCATTCCCATCTTCTACAAGGTTAGGGCAAGAGATGTGAG 335 Query 331 AGGACAGACAGGAAAGTTTGGTGACAAA-TTTTGGGAGCTAGCAA-AGGTTTCTCGTGGA 388 ||||||||| || |||||||||| || ||||||| ||| |||| | || |||| ||| Sbjct 336 AGGACAGACCGGTGAGTTTGGTGA-AACGTTTTGGGCGCTTGCAAGAACTT-CTCGAGGA 393 Query 389 GATAAGATCAAGAAGTGGAAGGATGCTTTAGAATGTATCACCGGGAAGATGGGTTTGTCC 448 ||| |||||| | |||||||||| || |||| ||||| || |||||||| ||||| Sbjct 394 GATCAGATCATGGAGTGGAAGGAAGCGCTAGAGTGTATTTCCAACAAGATGGGCCTGTCC 453 Query 449 TTGGGA-A-AAAAG 460 |||||| | ||||| Sbjct 454 TTGGGAGACAAAAG 467 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 31898683345 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5