BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg925267

Length=416
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G57800.1 | Symbols: VIM5, ORTH3 | zinc finger (C3HC4-type RI...   359    1e-98


> AT1G57800.1 | Symbols: VIM5, ORTH3 | zinc finger (C3HC4-type 
RING finger) family protein | chr1:21408623-21412283 REVERSE 
LENGTH=2107
Length=2107

 Score =  359 bits (194),  Expect = 1e-98
 Identities = 267/302 (88%), Gaps = 5/302 (2%)
 Strand=Plus/Plus

Query  120   CAATGAAGACCGTCCAGAGAAAGCATTTACAACTGAGCGCGCTAAGAAACCAGGGAACGT  179
             ||||||||| |||||||| |||||||||||||||||||||||||||||| ||||||| | 
Sbjct  717   CAATGAAGATCGTCCAGATAAAGCATTTACAACTGAGCGCGCTAAGAAAACAGGGAATGC  776

Query  180   AAATGCTTCCAGTCGTAGGATTTTTGTTACAATCCCACTTGATCACTTTGGTCCTATACC  239
             ||||||||||||| | | |||||||||||||||||| |  ||||| ||||||||||||||
Sbjct  777   AAATGCTTCCAGTGGCAAGATTTTTGTTACAATCCCTCGAGATCATTTTGGTCCTATACC  836

Query  240   AACTGAAGATGATTCTGTCAGGAACCAATGTCTTTTGGTTGGAGAATCCTGGAAGGGCCG  299
             | ||||| ||||| |||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct  837   AGCTGAAAATGATCCTGTTAGGAACCAAGGTCTTTTGGTTGGAGAATCCTGGAAGGGCCG  896

Query  300   ACTTGAATGTTGGCAGTGGAGGGCTCACTTCCCACCTGTTTGTGGCATTGCTGGACATGC  359
             |||||  ||| |||||||| ||||||||||||||| |||||  |||||||||||||| ||
Sbjct  897   ACTTGCTTGTCGGCAGTGGGGGGCTCACTTCCCACATGTTTCCGGCATTGCTGGACAAGC  956

Query  360   TAGTTATGGAGCTC--T-T-T-GTGCTCTCCGGAGGTTATGAGGATGACGAGGATCATGG  414
              |||||||||||||  | | | |||||| | ||||||||||| ||||| |||||||||||
Sbjct  957   GAGTTATGGAGCTCAATCTGTTGTGCTCGCTGGAGGTTATGATGATGATGAGGATCATGG  1016

Query  415   AG  416
             ||
Sbjct  1017  AG  1018


 Score =  165 bits (89),  Expect = 3e-40
 Identities = 110/120 (92%), Gaps = 1/120 (1%)
 Strand=Plus/Plus

Query  1    GCTTGCTTGAAATGTTACTTGAAGTGGATGGGTCAGAGAAACCGCAGTTGTGGAACATGC  60
            |||||||||||||||| ||||||||||||||| ||| || ||||||||||||||||||||
Sbjct  529  GCTTGCTTGAAATGTTTCTTGAAGTGGATGGGGCAGGGACACCGCAGTTGTGGAACATGC  588

Query  61   CGCAGCGTAGTTCGTGAAAGCATGGCAAGCAATCCCCGTATCA-CTTGTCCATTGTGTCT  119
            ||||||||| ||| |||||||||||  | |||||||||||||| ||||||||||||||||
Sbjct  589  CGCAGCGTAATTCCTGAAAGCATGGTTACCAATCCCCGTATCAACTTGTCCATTGTGTCT  648



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19704957608


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5