BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925310
Length=1589
Score E
Sequences producing significant alignments: (Bits) Value
AT1G64780.1 | Symbols: ATAMT1;2, AMT1;2 | ammonium transporter ... 2449 0.0
> AT1G64780.1 | Symbols: ATAMT1;2, AMT1;2 | ammonium transporter
1;2 | chr1:24060770-24062630 REVERSE LENGTH=1861
Length=1861
Score = 2449 bits (1326), Expect = 0.0
Identities = 1491/1572 (95%), Gaps = 5/1572 (0%)
Strand=Plus/Plus
Query 2 TCTCTCTCC-CCCT-CCTCTCCACCATGGACACCGCAACCACCACATGCTCCGCCGTAGA 59
|||||| || |||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 42 TCTCTC-CCTCCCTCCCTCTCCACCATGGACACCGCAACCACCACATGCTCTGCCGTAGA 100
Query 60 TCTAGCTGCCCTCCTATCCTCTTCTTCTAACTCAACTTCTTCCCTGGCTGCGGCAACCTT 119
|||| ||||||||||||||||||||||||||||||| |||||||| || |||||||||||
Sbjct 101 TCTATCTGCCCTCCTATCCTCTTCTTCTAACTCAACATCTTCCCTCGCCGCGGCAACCTT 160
Query 120 TTTATGCTCCCAAATTTCAAACATCTCCAACAAACTCTCCGACACAACTTTTGCCGTCGA 179
|||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 161 TTTATGTTCCCAAATTTCAAACATCTCCAACAAACTCTCCGACACAACTTATGCCGTCGA 220
Query 180 CAACACGTATCTCCTCTTCTCCGCCTACCTCGTCTTTGCTATGCAGCTCGGTTTCGCCAT 239
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||
Sbjct 221 CAACACGTATCTCCTCTTCTCCGCCTACCTTGTCTTTGCCATGCAGCTCGGTTTCGCTAT 280
Query 240 GCTTTGTGCCGGCTCAGTCCGAGCCAAGAACACTATGAACATCATGCTTACTAATGTCCT 299
||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 281 GCTTTGTGCTGGATCAGTCCGAGCCAAGAACACTATGAACATCATGCTTACCAATGTCCT 340
Query 300 TGACGCTGCTGCTGGAGCCATCTCTTACTACCTCTTTGGATTCGCATTCGCCTTTGGTAC 359
||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 341 TGATGCTGCCGCTGGAGCCATCTCTTACTACCTCTTCGGATTCGCATTCGCCTTTGGTAC 400
Query 360 ACCTTCCAACGGCTTCATTGGCCGCCACCATAGCTTCTTCGCTTTAAGCTCTTACCCTGA 419
|||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 401 ACCTTCCAACGGATTCATCGGTCGCCACCATAGCTTCTTCGCTTTAAGCTCTTACCCTGA 460
Query 420 ACGCTCCGGCTCCGACTTCAGCTTTTTCCTCTACCAATGGGCTTTTGCCATAGCCGCGGC 479
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 461 ACGCCCCGGCTCCGACTTCAGCTTTTTCCTCTACCAATGGGCTTTTGCCATAGCCGCGGC 520
Query 480 AGGAATCACCAGCGGCTCCATCGCCGAGCGAACCCAATTCGTTGCTTACCTTATCTACTC 539
|||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 521 CGGAATCACTAGCGGTTCCATCGCCGAGCGAACGCAATTCGTTGCTTACCTTATCTACTC 580
Query 540 TACTTTCTTGACTGGTTTTGTTTACCCGACCGTCTCGCACTGGTTCTGGTCGAGTGATGG 599
|||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 581 TACTTTCTTGACCGGTTTTGTTTACCCGACAGTCTCGCACTGGTTCTGGTCAAGTGATGG 640
Query 600 TTGGGCTAGCGCGTCCCGGTCTGACAACAATCTCTTGTTTGGCTCAGGTGCTATTGATTT 659
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 641 ATGGGCTAGCGCGTCCCGGTCTGACAACAATCTCTTGTTTGGCTCAGGTGCTATTGATTT 700
Query 660 CGCAGGTTCAGGAGTTGTTCACATGGTAGGTGGAATTGCCGGTTTATGGGGAGCGTTAGT 719
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 701 CGCAGGTTCAGGAGTTGTTCACATGGTAGGTGGAATTGCCGGTTTATGTGGAGCGTTAGT 760
Query 720 AGAAGGACCACGAATAGGTAGATTTGACCGGTCAGGCCGGTCCGTGGCTTTACGTGGTCA 779
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 761 TGAAGGACCAAGAATAGGTAGATTTGACCGGTCAGGCCGGTCCGTGGCTTTACGTGGTCA 820
Query 780 CAGTGCTTCCCTTGTCGTCCTTGGTACCTTCTTGTTGTGGTTTGGATGGTACGGGTTTAA 839
|||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 821 CAGTGCATCCCTTGTCGTGCTTGGTACCTTCTTGTTGTGGTTTGGATGGTATGGGTTTAA 880
Query 840 CCCTGGTTCCTTTTTAACTATTCTAAAAGGCTACGACAAGTCTCGGCCATATTATGGTCA 899
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 881 CCCTGGTTCCTTTTTAACCATTCTTAAAGGCTACGACAAGTCTCGGCCATATTATGGTCA 940
Query 900 ATGGAGCGCTGTAGGTCGCACGGCCGTCACAACAACGCTTTCTGGCTGCACCGCTGCGTT 959
||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||
Sbjct 941 ATGGAGCGCTGTAGGTCGCACCGCGGTCACCACAACGCTTTCTGGCTGCACCGCTGCGTT 1000
Query 960 GACCACTCTATTTAGTAAACGACTCTTAGCAGGCCACTGGAACGTCATTGACGTGTGCAA 1019
||| |||||||| |||||||| || |||||||| || |||||||| |||||||| |||||
Sbjct 1001 GACTACTCTATTCAGTAAACGGCTTTTAGCAGGTCATTGGAACGTTATTGACGTATGCAA 1060
Query 1020 CGGA-TTACTAGGCGGCTTCGCAGCTATAACCTCCGGATGTGCCGTGGTGGAGCCGTGGG 1078
|||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1061 CGGACTT-CTAGGCGGCTTTGCAGCTATAACCTCCGGATGTGCCGTGGTGGAGCCGTGGG 1119
Query 1079 CTGCTATAGTATGTGGCTTCGTGGCATCATGGGTTTTAATCGGATTTAACTTGCTTGCCA 1138
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1120 CTGCTATAGTATGTGGCTTTGTGGCATCATGGGTTTTAATCGGATTTAACTTGCTTGCCA 1179
Query 1139 AGAAACTTAAATACGACGACCCACTTGAGGCTGCTCAGCTCCACGGTGGATGTGGAGCAT 1198
||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1180 AGAAACTTAAATATGATGACCCACTCGAGGCTGCTCAGCTCCACGGTGGATGTGGAGCAT 1239
Query 1199 GGGGGTTGATCTTTACCGGGCTGTTTGCAAGCAAACAATACGTCAACGAGGTTTACTCCG 1258
|||| || ||||||||||||||||| ||||| ||| ||||||| |||||| |||||||||
Sbjct 1240 GGGGATTAATCTTTACCGGGCTGTTCGCAAGGAAAGAATACGTTAACGAGATTTACTCCG 1299
Query 1259 GCGATAGGCCTTATGGACTGTTGATGGGCGGGGGAGGAAAACTGCTAGCCGCGCAAATCG 1318
| ||||||||||| |||||||| ||||||||||||||||||||||| |||||||| ||||
Sbjct 1300 GTGATAGGCCTTACGGACTGTTCATGGGCGGGGGAGGAAAACTGCTCGCCGCGCAGATCG 1359
Query 1319 TTCAGATCATTGTGATCGTTGGGTGGGTAACGGTGACGATGGGACCTTTGTTTTATGGGT 1378
||||||| |||||||||||||||||||| ||||| || |||||||| |||||||||||||
Sbjct 1360 TTCAGATTATTGTGATCGTTGGGTGGGTGACGGTAACTATGGGACCGTTGTTTTATGGGT 1419
Query 1379 TACATAAGATGAATCTTTTGAGGATATCAGCAGAAGATGAGATGGCTGGAATGGACATGA 1438
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1420 TACATAAGATGAATCTTTTGAGGATATCAGCAGAAGATGAGATGGCAGGAATGGACATGA 1479
Query 1439 CCCGTCATGGAGGATTTGCTTACGCATACAATGACGAAGACGACGTGTCGACTAAACCTT 1498
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1480 CACGTCATGGAGGATTTGCTTACGCATACAATGACGAAGACGACGTGTCGACTAAACCAT 1539
Query 1499 GGGGTCATATGGCTGGAAGAGTGGAGCCTACAAGCCGGAGCTCGACTCCTACACCGACCC 1558
|||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1540 GGGGTCATTTCGCTGGAAGAGTGGAGCCTACAAGCCGGAGCTCGACTCCTACACCGACCT 1599
Query 1559 TCACTGTTTGAT 1570
| ||||||||||
Sbjct 1600 TGACTGTTTGAT 1611
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78463451835
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5