BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg925319

Length=398
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G09910.1 | Symbols:  | Ras-related small GTP-binding family ...   121    6e-27
  AT1G36180.1 | Symbols: ACC2 | acetyl-CoA carboxylase 2 | chr1:1...  87.9    6e-17


> AT5G09910.1 | Symbols:  | Ras-related small GTP-binding family 
protein | chr5:3093272-3095156 FORWARD LENGTH=1130
Length=1130

 Score =  121 bits (65),  Expect = 6e-27
 Identities = 138/171 (81%), Gaps = 14/171 (8%)
 Strand=Plus/Plus

Query  194  TTGAAGAAAT-GGCGGGTGAAGTTTCAGTAACTAGGACA-TGTTCAGCTCCTCTTTCTTC  251
            ||| |||||| |||||||||||||||||||||| ||  | | ||||||||| ||||||||
Sbjct  376  TTGCAGAAATGGGCGGGTGAAGTTTCAGTAACT-GGGGAGTTTTCAGCTCCCCTTTCTTC  434

Query  252  TGGTGGGCTTGGTTGTCTTCCAGTCCCATACAT--TT-TTCAGCTCATCATTATTGGAAA  308
            |||||||| |||| ||||||| |||||||||||  || ||  |   | ||  |  |   |
Sbjct  435  TGGTGGGCCTGGTGGTCTTCCCGTCCCATACATCGTTATT--G-GAAACA--A-AGCTGA  488

Query  309  CAAAGCTGAC-AAGGAAGGAACAAATGGAAGCAGTGGCAATCTTGTTGATG  358
             |  |||| | |||| |||||||||||||||||||||||||||||||||||
Sbjct  489  TATTGCTGCCAAAGG-AGGAACAAATGGAAGCAGTGGCAATCTTGTTGATG  538


> AT1G36180.1 | Symbols: ACC2 | acetyl-CoA carboxylase 2 | chr1:13545972-13558492 
FORWARD LENGTH=7296
Length=7296

 Score = 87.9 bits (47),  Expect = 6e-17
 Identities = 53/56 (95%), Gaps = 0/56 (0%)
 Strand=Plus/Plus

Query  82    TGGCAAGAGTACGTTGCAGTTTTGGCGACACGACTACCTAAAGATCTCAGGAACAT  137
             |||||||||| | |||||||| ||||||||||||||||||||||||||||||||||
Sbjct  2830  TGGCAAGAGTGCTTTGCAGTTCTGGCGACACGACTACCTAAAGATCTCAGGAACAT  2885



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18800138126


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5