BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925320
Length=374
Score E
Sequences producing significant alignments: (Bits) Value
AT5G41000.1 | Symbols: YSL4 | YELLOW STRIPE like 4 | chr5:16420... 375 1e-103
> AT5G41000.1 | Symbols: YSL4 | YELLOW STRIPE like 4 | chr5:16420780-16423830
FORWARD LENGTH=2276
Length=2276
Score = 375 bits (203), Expect = 1e-103
Identities = 228/240 (95%), Gaps = 2/240 (1%)
Strand=Plus/Plus
Query 49 GGCTTCATCTTTAGCGCCTTGTTGGGGATTTTGTTCTGTATCATTACCCATAAGCTCAAT 108
||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 245 GGCTTGATCTCTAGCGCCTTGTTAGGGATTTTGTTCTGTATCATTACCCATAAGCTCAAT 304
Query 109 CTAACAATCGGAATCATTCCTTCGCTTAATGTAGCTGCTGATCTTCTCGGCTTCTTCTTC 168
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 305 CTAACAATCGGAATCATTCCTTCGCTTAATGTAGCTGCTGGTCTTCTCGGCTTCTTCTTC 364
Query 169 GTCAAATCGTGGACTGGGTTCTTGTCTAAATTAGGGTTTTCACCTAAACGCTTTACTAAG 228
|||| |||||||||||||||||||||||||||||||||| | |||||| ||||||||||
Sbjct 365 ATCAAGTCGTGGACTGGGTTCTTGTCTAAATTAGGGTTTTTATCTAAACCCTTTACTAAG 424
Query 229 CAAGAGAACACTGTTATTCAGACTTGCGTTGTCTCCTGCTACGGT-TGTGCTTATAGCGG 287
|||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 425 CAAGAGAACACTGTTATTCAGACTTGCGTTGTCTCCTGCTACGGCCT-TGCTTATAGCGG 483
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17593712150
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5