BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg925321

Length=531
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G64850.1 | Symbols:  | Calcium-binding EF hand family protei...   852    0.0  


> AT1G64850.1 | Symbols:  | Calcium-binding EF hand family protein 
| chr1:24096435-24097650 REVERSE LENGTH=678
Length=678

 Score =  852 bits (461),  Expect = 0.0
 Identities = 505/526 (96%), Gaps = 4/526 (1%)
 Strand=Plus/Plus

Query  1    GAGAAGAAGATCACT-CATCGCCATGGGACAAGTCTTTAACAAGCTCCGAGGTAAAGAGT  59
            ||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  55   GAGAAGAAGATTA-TCCATCGCCATGGGACAAGTCTTTAACAAGCTCCGAGGTAAAGAGT  113

Query  60   GGAGACATAAGCAGGTACAAGCGATATGTGATCGTGTTTTCGATCGGTTCAAGATTCAAA  119
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  114  GGAGACATAAGCAGGTACAAGCGATATGTGATCGTGTTTTCGATCGGTTCAAGATGCAAA  173

Query  120  CCGGAAGAGCCAATCTTACGTTTGAAGAGTTATACATCGCGGTGCTTCTTGTTTACAATG  179
            |||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||
Sbjct  174  CCGGAAGAGCCAATCTTACGTTTGAAGAGTTATACATCGCTGTTCTTCTCGTTTACAATG  233

Query  180  ACATAAACAAGAGATTGCCTGGTCCTCATTTCGATCCACCTTCTAAGGATCTTGTCAA-A  238
            |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct  234  ACATAAACAAGAGATTGCCTGGTCCTCATTTCGATCCACCTTCTAAGGATCTAGTCAATA  293

Query  239  GCCATTATGACGGATTGCGATATCAACTTGGATGGAGAAATTGATAGGGATGAGTTTGTG  298
            || ||||||||||| || ||||||||||||||||||||| |||||||||| |||||||||
Sbjct  294  GC-ATTATGACGGACTGTGATATCAACTTGGATGGAGAACTTGATAGGGAAGAGTTTGTG  352

Query  299  AAGTTTATTGAGCAGATTACGGCTGAGACATTTAACGTGGTGAGTCAGGGTTTGATCATA  358
            ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct  353  AAGTTTATTGAGCAGATTACGGCTGAGACGTTTAACGTGGTTAGTCAGGGTTTGATCATA  412

Query  359  TCTTTGATTGTGGCTCCAACTGTGGCTATTGCGACGAAGAAGGCCACGGAAGGTGTCCCG  418
             |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| 
Sbjct  413  GCTTTGATTGTTGCTCCCACTGTGGCTATTGCGACGAAGAAGGCCACGGAAGGTGTCCCT  472

Query  419  GGAGTTGGCAAAGTTGTGCAGAAGCTGCCTACTTCAATCTATGCTTCTCTTGTGACTCTT  478
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  473  GGAGTTGGCAAAGTTGTGCAGAAGCTGCCTACTTCAATCTATGCTTCTCTTGTGACTCTT  532

Query  479  GCAGTTGTGTGGGTGAATTCTGATTCAAGTTAAGCTTCTCATATTG  524
            |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  533  GCAGTTATGTGGGTGAATTCTGATTCAAGTTAAGCTTCTCATATTG  578



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25418478382


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5