BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925324
Length=952
Score E
Sequences producing significant alignments: (Bits) Value
AT1G64870.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1338 0.0
AT3G45200.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 435 5e-121
> AT1G64870.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G45200.1);
Has 99 Blast hits to 91 proteins in 10 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 99; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:24102917-24103831
FORWARD LENGTH=915
Length=915
Score = 1338 bits (724), Expect = 0.0
Identities = 854/917 (93%), Gaps = 7/917 (1%)
Strand=Plus/Plus
Query 21 ATGTCACATCCCACCATAGAACAACTACATGCTTTCCATGCACAAGACAGAGAGATTTTC 80
||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1 ATGTCACATCCCACCGTAGAACAACTACATGCTTTCCATGCACAAGAAAGAGAGATATTC 60
Query 81 TCTAAACTAGTCCTAAAATTTTTAAGACCACCAGCTGAGTCACTTCTTGTCATGGCCACA 140
||||||||||| | |||| | |||||||||||||||||||||||||||||||||||||
Sbjct 61 TCTAAACTAGTTCAAAAACTCCGAAGACCACCAGCTGAGTCACTTCTTGTCATGGCCACA 120
Query 141 TGGCTTTGGCTTGAAGACTTTGGCTTCGGAAACATTTTCTCCATCATCACAATTTTTAGC 200
||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 121 TGGCTTTGGTTTGAAGACTTTGGCTTCGGAAACATTTTCTCCATCATCACGGTTTTTAGC 180
Query 201 GATCTACTAATTGTAGATCTCGCTAACGAGGCTGTCTTGTGCTTCCAGTGCCTTGAGTCC 260
|||||||| ||||||||||||||||||||||||||||||||||| | ||||||||| ||
Sbjct 181 GATCTACTCATTGTAGATCTCGCTAACGAGGCTGTCTTGTGCTTTCGGTGCCTTGAATCT 240
Query 261 GACCAGCCCCCAAATGATGTCAATCAGATCCCTCTCACCGAGAGATTCATGAAAAAGGAC 320
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 241 GACCAGCCCCCAAATGATGTCAGTCAGATCCCTCTCACCGAGAGATTCATGAAAAATGAC 300
Query 321 ATATCCCTTCAAATACTCCACAAACATCGATACACTGCCATTACAGGAATAAAAAACTTT 380
||||||||||||||| ||||||| |||||||||||||||||||| |||||||| ||||||
Sbjct 301 ATATCCCTTCAAATAATCCACAATCATCGATACACTGCCATTACGGGAATAAAGAACTTT 360
Query 381 TTAACCACTATTTGTTCTCGAATTTTCTCTGATATCCTTCAACGAGTTCTTCCGCCTTCA 440
|||||||||||||||||| |||| ||||||||||||||||||||||||||||| |||||
Sbjct 361 TTAACCACTATTTGTTCTAGAATATTCTCTGATATCCTTCAACGAGTTCTTCCATCTTCA 420
Query 441 TCATCCTCATTCATCACCAAAATCCGTCACCCTCTCATCATTCCCGGTTTCCCTCATCCG 500
|||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 421 TCATCCTCATTCATCACCAATCTCCGCCACCCTCTCATCATTCCCGGTTTCCCTCATCCA 480
Query 501 ACTTTTGGGAGCATCAATGTATTGCCTGATGTCGTTGCCAGGGATAATCTTCTAAACACA 560
||||||||||||||||| ||||||||| || ||||||| ||||||||||||| |||| ||
Sbjct 481 ACTTTTGGGAGCATCAACGTATTGCCTAATATCGTTGCTAGGGATAATCTTCCAAACGCA 540
Query 561 AATTTATTTCTTTTTCCTCATGGTCTTTGGGGCTGGAACGCT-ACCTATGTCGCGACTGA 619
|||| ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 541 AATTCATTTCTTTTTCCTCATGGTCTTTGGGGCTGGAACGCTAACC-ATGTCGCGACTGA 599
Query 620 TAAAGAACGGACGGTATTTCTAACGTTTTCTCGTGGTTTTCCCGTGTCACAAGCTGAGGT 679
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 600 TAAAGAACGGACGGTATTTCTAACGTTTTCTCGTGGTTTTCCCGTGTCACATGCTGAGGT 659
Query 680 GTAT-CATCTCTTCACCGAGATATATGGAGAAAATTGTGTTGAAAGCGTTTACATGCAAG 738
| || ||||||||||||||||||||||||||| ||||||| |||||||||||||||| ||
Sbjct 660 G-ATTCATCTCTTCACCGAGATATATGGAGAAGATTGTGTCGAAAGCGTTTACATGCCAG 718
Query 739 AGGAAGGTGGTAGTTCCTCCAACGAAAACACCAATTGCAATGGTCA---GCAACAACCAC 795
|||| ||||| | ||||||||| || ||||| |||||||||||||| |||||||||||
Sbjct 719 AGGACGGTGGAAATTCCTCCAATGACAACACAAATTGCAATGGTCATCAGCAACAACCAC 778
Query 796 TATACGCGAAGATGGTCTTGGACTCGGTTGTTACCGTAGATCGTATACTCAACGGCGAGG 855
||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 779 TATTCGCGAAGATGGTCTTGGACTCGGTTGTTACCGTAGATCGTATACTCAGCGGCCAGG 838
Query 856 aaaaaaaaaaGTATCGGATCAACGGAAAGCATATTTGGGCTCGTAAGTTCAAGAATAATA 915
||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 839 AAAAACAAAAGTATAAGATCAATGGAAAGCATATTTGGGCTCGTAAGTTCAAGAATAATA 898
Query 916 AAGACGGTCTTATTTAA 932
||||||||||||| |||
Sbjct 899 AAGACGGTCTTATCTAA 915
> AT3G45200.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G64870.1);
Has 95 Blast hits to 91 proteins in 10 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 95; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:16548828-16549730
REVERSE LENGTH=903
Length=903
Score = 435 bits (235), Expect = 5e-121
Identities = 681/890 (77%), Gaps = 55/890 (6%)
Strand=Plus/Plus
Query 43 AACTACATGCTTTCCATGCACAAGACAGAGAGATTTTCTCTAAACTAGTCCTAAAATTTT 102
||||||||| ||||||||| |||||||||||||| ||||||||| | ||||| ||||| |
Sbjct 23 AACTACATGTTTTCCATGCTCAAGACAGAGAGATATTCTCTAAATTGGTCCTCAAATTCT 82
Query 103 TAAGACCACCAGCTGAGTCACTTCTTGTCATGGCCACATGGCTTTGGCTTGAAGACTTTG 162
||| || ||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 83 CAAGGCCTCCAGCTGAGTCACTTCTTGTCATGGCCACATGGCTTTGGCTCGAGGACTTTG 142
Query 163 GCTTCGGAAACATTTTCTCCATCATCA-CAATTTTTAGC-GATCTACTAATTGTAGATCT 220
|||| | |||||||||||| |||||| || | | | | |||| ||| |||| | |||
Sbjct 143 GCTTTGAAAACATTTTCTCAATCATCCTCACTCTC-A-CAGATCCACTCATTGCCGGTCT 200
Query 221 CGCTAACGAGGCTGTCTTGTGCTTCCAGTGCCTTGAGTCCGACCAGCCCCCAAATGATGT 280
||| |||| ||||||| ||||| ||||||||| | || | ||||||| || |
Sbjct 201 TGCTTACGAAGCTGTCTCATGCTTTCAGTGCCTTTCTTTAAACAATCCCCCAATTG--GC 258
Query 281 CAATCAGATCCCTCTCACCGAGAGA-T-TCATGAAAAAGGACATATCCCTTCAAAT-ACT 337
| | | ||||||||||| | | | | || |||||||| | ||||| || ||||| | |
Sbjct 259 CGA--A--TCCCTCTCACC-ACAAAATATC-TGAAAAAGAATATATCACTCCAAATGA-T 311
Query 338 CCACAAACATCGATACACTGCCATTACAGGAATAAAAAACTTTTTAACCACTATTTGTTC 397
| ||||| ||||||| | ||| || |||||||| |||||||| ||||||||| ||||| |
Sbjct 312 CTACAAAAATCGATATAGTGCTATCACAGGAATCAAAAACTTCTTAACCACTGTTTGTAC 371
Query 398 TC-GAATTTTCTCTGATATCCTTCAACGAGTTCTTCCGCCTTCATCA-TCCTCATTCATC 455
| |||| ||| | || ||||||| |||||||||||| ||||| ||| | || ||| |
Sbjct 372 -CAGAATCTTCACCGACATCCTTCTACGAGTTCTTCCACCTTCTTCAATG-TC-TTCCTT 428
Query 456 --AC-CAAAA-TCCGTCACCCTCT-CATCATTCCCGGTTTCCCTCATCCGACTTTTGGGA 510
|| ||| | | || || ||||| || || ||||| ||||||||||||| |||||| |
Sbjct 429 TGACGCAAGACTTCGCCAACCTCTTCAA-ATCCCCGGGTTCCCTCATCCGATTTTTGGAA 487
Query 511 GCATCAATGT-ATTGCCTGATGTCGTTGCCAGGGATAATCTTCTA-AACAC-AA-ATTTA 566
|||||||||| || |||| ||| |||| ||||||||| |||| |||| || | |
Sbjct 488 GCATCAATGTGAT-GCCTAATGAAGTTGATAGGGATAAT-TTCTCCAACAAGAACAACAA 545
Query 567 TTTCTTTTTCCTC--A--TGGTCTTTGGGGCTGGAACGCTACCTATG--TCGCGACTGAT 620
|| |||||| || | |||||| |||||||||||||||| | || |||| |||||
Sbjct 546 CTTATTTTTCATCCCAAATGGTCTATGGGGCTGGAACGCTAA-T-TGCATCGCCACTGAG 603
Query 621 AAAGAACGGACGGTATTTCTAACGTTTTCTCGTGGTTTTCCCGTGTCACAAGCTGAGGTG 680
|| || ||||| | ||| |||| ||||||||||||| ||| ||| | || |||||| |
Sbjct 604 AACGATCGGACCTTGTTTTTAACATTTTCTCGTGGTTATCCAGTGACTCATGCTGAGATA 663
Query 681 TATC-ATCTCTTCACCGAG-ATATATGGAGAAAATTGTGTTGAAAGCGTTTACATGCAAG 738
|| | ||||| ||| || | |||||||||||||||||||| | ||||||||||||
Sbjct 664 -ATTGAGCTCTTTACCAAGGAG-TATGGAGAAAATTGTGTTGAGGGAGTTTACATGCAAC 721
Query 739 AGGA-AGGTGGTAGTTCCTCCAACGAAAACACCAATTGCAA-TG-GTCAGCAACAACCAC 795
| || | || || | ||| | |||| | ||| | | || | |||||||| |||
Sbjct 722 ATGACAACAAA-AGATCTTTCAATGCAAACGCAAATAGGAGCTGCG--AGCAACAATCAC 778
Query 796 TATACGCGAAGATGGTCTTGGACTCGGTTGTTACCGTAGATCGTATACTCAACGGCGAGG 855
||| |||| | | ||||||||||||||| |||||| || || ||||| | | ||||
Sbjct 779 TATTTGCGAGGCTTGTCTTGGACTCGGTTACTACCGTGGACCGCGTACTCGATGACGAGC 838
Query 856 aaaaaaaaaaG-T-ATCGGATCAACGGAAAGCATATTTGGGCTCGTAAGT 903
| |||||| || | || | || |||||||| | ||||||||||||||||
Sbjct 839 AGAAAAAAGAGCTTAT-G-ATTTACGGAAAGAACATTTGGGCTCGTAAGT 886
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46567054269
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5