BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg925349

Length=250
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G10720.1 | Symbols: AHK5, CKI2, HK5 | histidine kinase 5 | c...   292    8e-79
  AT5G10680.1 | Symbols:  | calmodulin-binding protein-related | ...   147    6e-35


> AT5G10720.1 | Symbols: AHK5, CKI2, HK5 | histidine kinase 5 | 
chr5:3385901-3390686 FORWARD LENGTH=3291
Length=3291

 Score =  292 bits (158),  Expect = 8e-79
 Identities = 193/210 (92%), Gaps = 2/210 (1%)
 Strand=Plus/Plus

Query  30   AATGTTCCGGTTTTGGATGAGACTAATGATTTGTTCCGCAGGTTTATGCAGAAGAAACGA  89
            ||||||||||||||||||||||| | |||||||||||||||||||| |||||| ||||||
Sbjct  759  AATGTTCCGGTTTTGGATGAGACGAGTGATTTGTTCCGCAGGTTTAGGCAGAAAAAACGA  818

Query  90   GATGCGTTGTTCGATAGCAAGAAGATTGAGATCTATGAGGAGTTTGACACGGTTGCATAT  149
            ||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  819  GATGCCTTGGTCGATAGCAAGAAGATTGAGATCTATGAGGAGTTTGACACTGTTGCATAT  878

Query  150  TGGAAACAGAAGGCGTTGAATCTGGAGAAAATGCTTGAGGCAAGTACTGAGAGAGAAAGG  209
            ||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||
Sbjct  879  TGGAAACAGAAGGCGTTGAGTCTTGAGAAAATGCTTGAGGCGAGTACTGAGAGAGAAAGG  938

Query  210  AGACTAATCGAGAATAGCTGAGTGAGGGTT  239
             || | || |||||  |||||||||| |||
Sbjct  939  CGATTGATGGAGAA--GCTGAGTGAGAGTT  966


> AT5G10680.1 | Symbols:  | calmodulin-binding protein-related 
| chr5:3373584-3374309 FORWARD LENGTH=726
Length=726

 Score =  147 bits (79),  Expect = 6e-35
 Identities = 97/106 (92%), Gaps = 0/106 (0%)
 Strand=Plus/Plus

Query  31   ATGTTCCGGTTTTGGATGAGACTAATGATTTGTTCCGCAGGTTTATGCAGAAGAAACGAG  90
            ||||| |||||||||||||||| | ||||||||||||| |||||| |||||||| |||||
Sbjct  374  ATGTTTCGGTTTTGGATGAGACGAGTGATTTGTTCCGCGGGTTTAGGCAGAAGAGACGAG  433

Query  91   ATGCGTTGTTCGATAGCAAGAAGATTGAGATCTATGAGGAGTTTGA  136
            | | |||| |||||||||||||||||||||||||||||||||||||
Sbjct  434  AAGTGTTGGTCGATAGCAAGAAGATTGAGATCTATGAGGAGTTTGA  479



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11360511274


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5