BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg925359

Length=295
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G65000.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   446    7e-125


> AT1G65000.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT5G38060.1); 
Has 49 Blast hits to 49 proteins in 14 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 49; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:24147044-24148689 
FORWARD LENGTH=680
Length=680

 Score =  446 bits (241),  Expect = 7e-125
 Identities = 279/297 (94%), Gaps = 4/297 (1%)
 Strand=Plus/Plus

Query  2    TTGGTTTCAGTGTTCATCAACAATGGAGACGAAGGAGATGGAGAAGTTGTGCCAAAAGTG  61
            ||| || |||||||| || | |||||||| |||||||||||||||||||||||||| |||
Sbjct  91   TTGATTACAGTGTTCTTCGAGAATGGAGAAGAAGGAGATGGAGAAGTTGTGCCAAAGGTG  150

Query  62   CAAACAAAGCTACACAGATTC-TTCAAACGACACTTCCTCTTGCCGTTTTCATCCTTCCT  120
            |||||||||||||||||| || ||||||||| ||||||||||||||||||||||||||||
Sbjct  151  CAAACAAAGCTACACAGA-TCTTTCAAACGAAACTTCCTCTTGCCGTTTTCATCCTTCCT  209

Query  121  TCTTTGTTTGTCGTCGTCACGATGACCAGAAAAGGTACTATGAACTGAAACCAGAGGATC  180
            |||| ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct  210  TCTTCGTTTGTCGTCGTCACGATGACCAGAAAAGGTACTATGAATTGAAACCAGATGATC  269

Query  181  CACCGTATGCAGCCAAGTTCTATGATTGTTGCGGGGCAGAGGATCCTAATGCACCAGGTT  240
            |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  270  CACCGTATGCTGCCAAGTTCTATGATTGTTGCGGGGCAGAGGATCCTAATGCACCAGGTT  329

Query  241  GTGTCACCAGCCCTCACATTTCATATGATGACTGATGTATGAGTGAG--CTCTCATA  295
            ||||||| | |||||||||||||||||||||||||||||||||||||  ||||||||
Sbjct  330  GTGTCACAAACCCTCACATTTCATATGATGACTGATGTATGAGTGAGAGCTCTCATA  386



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13622559979


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5