BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925362
Length=1080
Score E
Sequences producing significant alignments: (Bits) Value
AT1G65030.1 | Symbols: | Transducin/WD40 repeat-like superfami... 1714 0.0
> AT1G65030.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr1:24156770-24158675 FORWARD LENGTH=1230
Length=1230
Score = 1714 bits (928), Expect = 0.0
Identities = 1026/1073 (96%), Gaps = 8/1073 (1%)
Strand=Plus/Plus
Query 1 GAAACCTCTCATCGAAGCTACAATGAGTATCATCGCAGGCTCCTACGAGAGATTCATTTG 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 7 GAAACCTCTCACCGAAGCTACAATGAGTATCATCGCAGGCTCCTACGAGAGATTCATTTG 66
Query 61 GGGTTTCAGGCTTAAACCCACAAAGCACGACGCCGATAAC-CAAACCCTAACTCTCTCCC 119
|||||||| |||||||||||| |||||||||||||| | | |||||||||||||||||||
Sbjct 67 GGGTTTCAAGCTTAAACCCACGAAGCACGACGCCGA-ATCTCAAACCCTAACTCTCTCCC 125
Query 120 CTCTCTTCTCCTACCCATCCCACATCTCCCCAATCACCACCGTCGCTTGTTCCGGTCCCG 179
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 126 CTCTCTTCTCCTACCCTTCCCACATCTCCCCAATCACCACCGTCGCTTGTTCCGGTCCCG 185
Query 180 CCGCAGCCTCCGGCGGCTCCGACGATACAATCCACCTCTACGACCTCCCCTCCGCTTCTT 239
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 186 CCGCAGCTTCCGGCGGCTCCGACGATACAATCCACCTCTACGACCTTCCCTCCGCTTCTT 245
Query 240 CCCTCGGCTCTCTCCTTGACCACAATCACGCAGCTTCTATCACTGCTCTCTCCTTCTACA 299
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 246 CCCTCGGCTCTCTCCTTGACCACAATCACGCAGCTTCAATCACCGCTCTCTCCTTCTACA 305
Query 300 CTCCTTCGTCCCTCTCCTTCCCTCGTAATCTAATCTCCGCCGCCGCAGATGGCTCCGTCG 359
| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 306 CACCTTCTTCACTCTCCTTCCCTCGTAATCTAATCTCCGCCGCCGCAGATGGCTCCGTTG 365
Query 360 CGATATTCGATACCGATCCTTTTGTTTTGCTTAAGTCGTTTCGTCCTCATAAGAAAGCGG 419
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 366 CTATATTCGATACTGATCCTTTTGTTTTGCTTAAGTCGTTTCGTCCTCATAAGAAAGCGG 425
Query 420 TTAATGATTTAGCGATTCATCCTTCAGGGAAACTTGCTTTAGCTGTTTATCGTGATGAGT 479
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 426 TTAATGATTTAGCGATTCATCCTTCAGGGAAGCTTGCTTTAGCTGTTTATCGTGATGAGT 485
Query 480 TCTTTGCGATGTTGAATTTGGTTAGAGGAAAGAGGAGTTTTTGTTGTAGGTTAGGTCATG 539
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 486 TCTTTGCGATGTTGAATTTAGTTAGAGGAAAGAGGAGTTTTTGTTGTAGGTTAGGTCATG 545
Query 540 AAGCTAGTCTTGTGAAATTTGATCCTAGTGGTGAAAGGTTTTTCATGGTTGTGAGTAATA 599
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 546 AAGCTAGTCTTGTGAAATTTGATCCTAGTGGTGAAAGGTTTTACATGGTTGTGAGTAATA 605
Query 600 AAGTTGGAGTTCATCAGTCTGAAGATGCTAAGCTTCTTCTCGAGCTCGAGAATCCGAGCC 659
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 606 AAGTTGGAGTTCATCAGTCTGAAGATGCTAAGCTTCTTCTTGAGCTCGAGAATCCGAGCC 665
Query 660 GCAAGCGTATACTCTGCGCTGCTCCCGGAGAGAGTGGAACTCTGTTTACAGGTGGTGAGG 719
|||||||||| ||||| ||| |||| |||||||||||||||||||| |||||||||||||
Sbjct 666 GCAAGCGTATTCTCTGTGCTACTCCTGGAGAGAGTGGAACTCTGTTCACAGGTGGTGAGG 725
Query 720 ATCGGGCTATAACAGCTTGGGACACAAATAGCGGGAAGCTTGCTTATTCCATAGAAGATG 779
|||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||
Sbjct 726 ATCGGGCTATAACAGCTTGGGATACAAATAGTGGGAAGCTTGCATATTCCATAGAAGATG 785
Query 780 CCCACCCAGCTCGAATCAAAGGTATTGTTGTGCTCACCAGGAATGATAGTGACGGCTCCT 839
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 786 CTCACCCAGCTCGAATCAAAGGTATTGTTGTGCTTACCAGGAATGATAGTGACGGCTCCT 845
Query 840 TGGAAGATCCATACTTGATTGGTTCTGCATCGTCTGATGGCGGAATC--A-GAGTTTGGG 896
|||||||||||||||||||||||||||||||||||||| | || ||| | | |||||||
Sbjct 846 TGGAAGATCCATACTTGATTGGTTCTGCATCGTCTGAT-G-GG-ATCATACGTGTTTGGG 902
Query 897 ATGTGCGAATGGCGGCTAAAGAGAATACAAAACCATTAGCCGAGACAAATACTAAATCAA 956
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 903 ACGTGCGAATGGCGGCTAAAGAAAATACAAAACCATTAGCCGAGACAAATACTAAATCAA 962
Query 957 GGCTTACTTGTCTTGCCGGGTCAGCTCTTAAATCTATGAGACGGCCACAGATTGGAAAGC 1016
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 GGCTTACTTGTCTTGCCGGGTCAGCTCTTAAATCTATGAGACGGCCACAGATTGGAAAGC 1022
Query 1017 AGCAAGCTCAGAAGGTAGACGAAGGGGACGAGAACTCAGAATGAGAGCTGATT 1069
|| || |||||||||||||||||| | | ||| ||||||||| ||||||||||
Sbjct 1023 AGGAACCTCAGAAGGTAGACGAAGAGCATGAGGACTCAGAATAAGAGCTGATT 1075
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52911374430
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5