BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg925363

Length=318
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G65032.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   490    3e-138


> AT1G65032.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: cellular_component unknown; Has 30201 Blast 
hits to 17322 proteins in 780 species: Archae - 12; Bacteria 
- 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses 
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr1:24158650-24159585 
REVERSE LENGTH=644
Length=644

 Score =  490 bits (265),  Expect = 3e-138
 Identities = 296/311 (95%), Gaps = 2/311 (1%)
 Strand=Plus/Plus

Query  1    TTTGGTTATAAGGACGAAGCCATGAAGAGTCTGATATGGTTAACAGCAGAAGAGGCTGCA  60
            ||| |||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  105  TTTTGTTA-AA-GACGAAGCCATGAAGAGTCTGATATGGTTAACAGCAGAAGAGGCTGCA  162

Query  61   AAGAACAGAGGAAAAGTTCTTTCTTTGTATCGACAATTACTTCGGAGCATCAACTCGCCG  120
            |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| 
Sbjct  163  AAGAACAGAGGAAAAGTTCTTTCTTTGTATCGACAATTACTTAGGAGCATTAACTCGCCA  222

Query  121  AAATTGCAGCTTAGTTATGCTGCAAGACTTGCAAAGAAAGCTGAGGTTAAGACCATCTTC  180
            ||||||||||||||||||||| |||||||||| |||||||||||||||| ||||||||||
Sbjct  223  AAATTGCAGCTTAGTTATGCTTCAAGACTTGCGAAGAAAGCTGAGGTTAGGACCATCTTC  282

Query  181  TTGTTTGGCTCCGAGGAGATTTCGAAACACAATGTCGCTGATCTCATCCGTACCGCTGAA  240
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct  283  TTGTTTGGCTCTGAGGAGATTTCGAAACACAATGTCGCTGATCTCATCCGTACTGGTGAA  342

Query  241  TATGCTCTTTCTCAGTTGAAACAAGGCAAAATCCCCAACAACACCACTCAGTATTGAGTC  300
            |||||||||||||| ||||||||||||||||||||||||||| | |||||||||||||||
Sbjct  343  TATGCTCTTTCTCAATTGAAACAAGGCAAAATCCCCAACAACTCTACTCAGTATTGAGTC  402

Query  301  ATCATTGTCAC  311
            |||||||||||
Sbjct  403  ATCATTGTCAC  413



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14778718206


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5