BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925371
Length=373
Score E
Sequences producing significant alignments: (Bits) Value
AT2G37585.1 | Symbols: | Core-2/I-branching beta-1,6-N-acetylg... 291 4e-78
> AT2G37585.1 | Symbols: | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase
family protein | chr2:15765784-15767878
FORWARD LENGTH=1391
Length=1391
Score = 291 bits (157), Expect = 4e-78
Identities = 198/218 (91%), Gaps = 2/218 (1%)
Strand=Plus/Plus
Query 13 AAATCGAATCATGAAAAGATCTCACATTTCTTCTCCTCGTTCTTATTCTCGACCAGCGAT 72
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 71 AAATCGAATCATGAAAAGATCTCACATTTCGTCTCCTCGTTCTTATTCACGACCAGCGAT 130
Query 73 TTCAATCTTCAGTGTTTTCCTCTTGTTTCTTCTGGGTTTAACACTAA-CTTCTCGAAAAC 131
|||||||||| |||| ||||||||||||||||||| ||||||||||| || |||||||||
Sbjct 131 TTCAATCTTCGGTGTCTTCCTCTTGTTTCTTCTGGTTTTAACACTAAGCT-CTCGAAAAC 189
Query 132 CATCAGATCCATCCTTCTGTTTAGCTCCAAATCGGAACTTATCCAGAATATCGAAGATTC 191
|||||||| |||||| | |||||||||||||||| |||||| ||| || ||||| |||||
Sbjct 190 CATCAGATTCATCCTCCGGTTTAGCTCCAAATCGAAACTTAGCCACAAAATCGACGATTC 249
Query 192 CGAAGCTCACGTATTTGGTAACGGGGACGAAAGGAGAT 229
||| | | |||||||||||||||| ||||||||||||
Sbjct 250 CGAGGTTTGCGTATTTGGTAACGGGAACGAAAGGAGAT 287
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17543444401
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5