BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg925372 Length=616 Score E Sequences producing significant alignments: (Bits) Value AT1G50910.1 | Symbols: | unknown protein; Has 1105 Blast hits ... 907 0.0 > AT1G50910.1 | Symbols: | unknown protein; Has 1105 Blast hits to 802 proteins in 217 species: Archae - 2; Bacteria - 177; Metazoa - 445; Fungi - 210; Plants - 58; Viruses - 6; Other Eukaryotes - 207 (source: NCBI BLink). | chr1:18866753-18869933 REVERSE LENGTH=1927 Length=1927 Score = 907 bits (491), Expect = 0.0 Identities = 547/575 (95%), Gaps = 0/575 (0%) Strand=Plus/Plus Query 1 AATTGTTTGAATAAAACTCCATGGATGATACACAAGTCAAAGCTCTGGAGGAGAAGCTGA 60 ||||| ||||| ||||||||||||||||||||||||| |||||||| || |||||||||| Sbjct 75 AATTGCTTGAAGAAAACTCCATGGATGATACACAAGTTAAAGCTCTAGAAGAGAAGCTGA 134 Query 61 AGAGTCAGCTTGGCCAGCTTGAACTCGAGCAAGCGGTGTTCGAGAGAATGGTCTACAAGA 120 |||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 135 AGAGTCAGCTAAGTCAGCTTGAACTCGAGCAAGCGGTGTTCGAGAGAATGGTTTACAAGA 194 Query 121 ATAAGAACCAGCATCGGAGATGCTCTTATTTTCAATACCTTCTCAAGGTGAGAAGGGACT 180 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | Sbjct 195 ATAAGAACCAGCATCGGAGATGCTCTTATTTTCAATACCTTCTCAAGGTGAGAAGAGAAT 254 Query 181 TGAGACTTTTAAGAACAGCAAACATGGAGAGTATGTTGAGACCTTGCTTTCATGTTATTT 240 ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| | Sbjct 255 TGAGACTTTTACGAACAGCAAACATGGAGGGTATGTTGAGACCTTGCTTTCATGTTATAT 314 Query 241 CTGGGAGAATAAGTAAACAGAAGATTCATGTTTTGGAGAGCTTGAAGTTGAAAAAATCTG 300 |||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| Sbjct 315 CTGGGAGAATAAGTAAACAGAAAATCCATGTTTTGGAGAGCTTGAAGTTGAAAAAATCTG 374 Query 301 ATACTGGGAAACCAAATATCTTGGAACGACTTCTTGGAGCTCTTCATTTACTCTCACAGA 360 |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| Sbjct 375 ATACTGGGAAACCAAATATCTTGGAACGGCTTCTTGGAGCTCTTCGTTTACTCTCACAGA 434 Query 361 TGACTGAACCCATCTTGAAGGCAGCTAGTGGGATATCCACTCTACTAGCTCGTTCATTTT 420 |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| | Sbjct 435 TGACTGAACCCATCTTAAAGGCAGCTAGTGGGATATCTACTCTACTAGCTCGTTCATTCT 494 Query 421 TCATAGGATTTTCTGTGACATTTTTGGCCCTGCTTGCACGCCTCCGAGTGTTGATTCAAC 480 |||||||||||||||||||||||||||| ||||||||||| |||||||| ||| | |||| Sbjct 495 TCATAGGATTTTCTGTGACATTTTTGGCGCTGCTTGCACGTCTCCGAGTATTGGTCCAAC 554 Query 481 AAATATTACTTGATGCTGTTTCAGTTTTCAATTCGGTAACATCTACATCACTGAAGAAAC 540 ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 555 AAATATTACTTGACGCTGTTTCAGTTTTCAATTCGGTGACATCTACATCACTGAAGAAAC 614 Query 541 AGTCTGTCAAGATAGCACAGGACGGGGTTGAGGTT 575 ||||||||||||||||||||||||||||||||||| Sbjct 615 AGTCTGTCAAGATAGCACAGGACGGGGTTGAGGTT 649 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 29688380877 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5