BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925372
Length=616
Score E
Sequences producing significant alignments: (Bits) Value
AT1G50910.1 | Symbols: | unknown protein; Has 1105 Blast hits ... 907 0.0
> AT1G50910.1 | Symbols: | unknown protein; Has 1105 Blast hits
to 802 proteins in 217 species: Archae - 2; Bacteria - 177;
Metazoa - 445; Fungi - 210; Plants - 58; Viruses - 6; Other
Eukaryotes - 207 (source: NCBI BLink). | chr1:18866753-18869933
REVERSE LENGTH=1927
Length=1927
Score = 907 bits (491), Expect = 0.0
Identities = 547/575 (95%), Gaps = 0/575 (0%)
Strand=Plus/Plus
Query 1 AATTGTTTGAATAAAACTCCATGGATGATACACAAGTCAAAGCTCTGGAGGAGAAGCTGA 60
||||| ||||| ||||||||||||||||||||||||| |||||||| || ||||||||||
Sbjct 75 AATTGCTTGAAGAAAACTCCATGGATGATACACAAGTTAAAGCTCTAGAAGAGAAGCTGA 134
Query 61 AGAGTCAGCTTGGCCAGCTTGAACTCGAGCAAGCGGTGTTCGAGAGAATGGTCTACAAGA 120
|||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 135 AGAGTCAGCTAAGTCAGCTTGAACTCGAGCAAGCGGTGTTCGAGAGAATGGTTTACAAGA 194
Query 121 ATAAGAACCAGCATCGGAGATGCTCTTATTTTCAATACCTTCTCAAGGTGAGAAGGGACT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 195 ATAAGAACCAGCATCGGAGATGCTCTTATTTTCAATACCTTCTCAAGGTGAGAAGAGAAT 254
Query 181 TGAGACTTTTAAGAACAGCAAACATGGAGAGTATGTTGAGACCTTGCTTTCATGTTATTT 240
||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct 255 TGAGACTTTTACGAACAGCAAACATGGAGGGTATGTTGAGACCTTGCTTTCATGTTATAT 314
Query 241 CTGGGAGAATAAGTAAACAGAAGATTCATGTTTTGGAGAGCTTGAAGTTGAAAAAATCTG 300
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 315 CTGGGAGAATAAGTAAACAGAAAATCCATGTTTTGGAGAGCTTGAAGTTGAAAAAATCTG 374
Query 301 ATACTGGGAAACCAAATATCTTGGAACGACTTCTTGGAGCTCTTCATTTACTCTCACAGA 360
|||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 375 ATACTGGGAAACCAAATATCTTGGAACGGCTTCTTGGAGCTCTTCGTTTACTCTCACAGA 434
Query 361 TGACTGAACCCATCTTGAAGGCAGCTAGTGGGATATCCACTCTACTAGCTCGTTCATTTT 420
|||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |
Sbjct 435 TGACTGAACCCATCTTAAAGGCAGCTAGTGGGATATCTACTCTACTAGCTCGTTCATTCT 494
Query 421 TCATAGGATTTTCTGTGACATTTTTGGCCCTGCTTGCACGCCTCCGAGTGTTGATTCAAC 480
|||||||||||||||||||||||||||| ||||||||||| |||||||| ||| | ||||
Sbjct 495 TCATAGGATTTTCTGTGACATTTTTGGCGCTGCTTGCACGTCTCCGAGTATTGGTCCAAC 554
Query 481 AAATATTACTTGATGCTGTTTCAGTTTTCAATTCGGTAACATCTACATCACTGAAGAAAC 540
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 555 AAATATTACTTGACGCTGTTTCAGTTTTCAATTCGGTGACATCTACATCACTGAAGAAAC 614
Query 541 AGTCTGTCAAGATAGCACAGGACGGGGTTGAGGTT 575
|||||||||||||||||||||||||||||||||||
Sbjct 615 AGTCTGTCAAGATAGCACAGGACGGGGTTGAGGTT 649
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29688380877
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5