BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg925381

Length=320
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G65113.1 | Symbols: SCRL2 | SCR-like 2 | chr1:24189464-24190...   368    2e-101


> AT1G65113.1 | Symbols: SCRL2 | SCR-like 2 | chr1:24189464-24190026 
FORWARD LENGTH=468
Length=468

 Score =  368 bits (199),  Expect = 2e-101
 Identities = 265/295 (90%), Gaps = 11/295 (4%)
 Strand=Plus/Plus

Query  24   ATGAAATGCGGTGTTCTGTTTATGGTTTCTTGTCTTC---TCACATTCCTCGTTCTCAGC  80
            |||||||| |||||| |||||||| ||||||||||||   |||||||||| |||||||||
Sbjct  1    ATGAAATGTGGTGTTTTGTTTATGATTTCTTGTCTTCTGATCACATTCCTTGTTCTCAGC  60

Query  81   CATGTTAGAGTGGTGGAATCCAAAACAAAATGGGGATGCGACATGAACAGGTCTTTTCCT  140
            |||||||||| |||||||||||||||||||||||||||||||||||||||  | ||||| 
Sbjct  61   CATGTTAGAGAGGTGGAATCCAAAACAAAATGGGGATGCGACATGAACAGACCATTTCCA  120

Query  141  GGACAGTGCGGACCTAATGGAAAGAATACATGCATAAGCGACAT-aaaaaaaTTGCCTGG  199
            ||| |||| ||| ||||||||||| ||||||||||||||||||| |||||||| ||||||
Sbjct  121  GGAAAGTGTGGAACTAATGGAAAGGATACATGCATAAGCGACATCAAAAAAAT-GCCTGG  179

Query  200  TGCACCAAAAGATCTTGTCGTACGTTGCGAATGTTCTGC--CGCTTTTGTTTGGCCGGGT  257
            ||| ||||||||||||||||||||||||||||||||| |  || ||||||||||  ||||
Sbjct  180  TGCGCCAAAAGATCTTGTCGTACGTTGCGAATGTTCT-CAACG-TTTTGTTTGGAAGGGT  237

Query  258  CAACCTCCCCG-GCGTTTATGTAAATGTCAATATGATTGTTAAGTTTTACTATAT  311
             | |||||| | |||||||||||||||||||||||||||||||| ||||||||||
Sbjct  238  TACCCTCCC-GAGCGTTTATGTAAATGTCAATATGATTGTTAAGCTTTACTATAT  291



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14879253704


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5