BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg925392

Length=460
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G65120.2 | Symbols:  | Ubiquitin carboxyl-terminal hydrolase...   597    3e-170


> AT1G65120.2 | Symbols:  | Ubiquitin carboxyl-terminal hydrolase-related 
protein | chr1:24191348-24196073 REVERSE LENGTH=3719
Length=3719

 Score =  597 bits (323),  Expect = 3e-170
 Identities = 382/411 (93%), Gaps = 2/411 (0%)
 Strand=Plus/Plus

Query  1    GTGGGAAGGAAAAGGTTCCAGGAATGGTTCATTACCTACAAGGTTCTTTCTTCTATGAAC  60
            ||||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||
Sbjct  297  GTGGGAAGGAAAAGGTTCCAGCAATGGTTCATTACCTACAAGGTTGTTTCTTTTATGAAC  356

Query  61   AAGTAACTAAAACAGAGAACAGTGACATGAAATTCCCATTCTTGTTGGCTTCTGTAGAAT  120
            |||  ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  357  AAGGGACTAAAACAGAAAACAGTGACATGAAATTCCCATTCTTGTTGGCTTCTGTAGAAT  416

Query  121  GCTTCTCGCAAGATTTG-GGGGTACACGCTTACTCTGCAATTGCACTTTTAGAATTAGGT  179
            ||||| || |||| ||| || ||||||||||||||||||||||||||||||||||| |||
Sbjct  417  GCTTCACGGAAGA-TTGTGGTGTACACGCTTACTCTGCAATTGCACTTTTAGAATTGGGT  475

Query  180  AAACTGATTGGCTCAGTATCATTTTACAGGAAAGCTTTGAACAATGCAAAAGAAGGTTTA  239
            |||||||||||||||| ||||||||||| ||||||| |||||| ||||||||||||||||
Sbjct  476  AAACTGATTGGCTCAGCATCATTTTACAAGAAAGCTCTGAACATTGCAAAAGAAGGTTTA  535

Query  240  TCTTTTATTGCTTCTTTTGGTGGTTTGAGGTTGAGCGAGGAAAATACCAAAAGTAATCTT  299
            ||||||||||||||||||||||||||||  ||||| ||||||||||| ||||||  ||||
Sbjct  536  TCTTTTATTGCTTCTTTTGGTGGTTTGAACTTGAGTGAGGAAAATACTAAAAGTTCTCTT  595

Query  300  GAGAATGTAGTCCTAGTGGCAGAGTCAATGATCCCAAAACTTCAAGGCAGAGTAAGGAGT  359
            ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct  596  GAGAATGTAGTCCTAGTGGCAGAGTCAATGATCCCAAAACTTCAAGGAAGTGTAAGGAGT  655

Query  360  GACTCGGATACGGCTGCGGCAGAGTCAATGATCCAAGCGGCAGACACAATG  410
            |||||||||||||||||| ||||| |||||||| ||||||||||  |||||
Sbjct  656  GACTCGGATACGGCTGCGACAGAGGCAATGATCGAAGCGGCAGATTCAATG  706



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21916738564


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5