BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925396
Length=934
Score E
Sequences producing significant alignments: (Bits) Value
AT1G65150.1 | Symbols: | TRAF-like family protein | chr1:24203... 1029 0.0
AT1G65370.1 | Symbols: | TRAF-like family protein | chr1:24284... 806 0.0
AT1G65050.1 | Symbols: | TRAF-like superfamily protein | chr1:... 547 6e-155
> AT1G65150.1 | Symbols: | TRAF-like family protein | chr1:24203841-24205775
REVERSE LENGTH=1312
Length=1312
Score = 1029 bits (557), Expect = 0.0
Identities = 808/926 (87%), Gaps = 29/926 (3%)
Strand=Plus/Plus
Query 8 TTGTGTAGAGAAAATGGGTTCATGTGCATCAGATCCTGCGA-T-TCTGAAGAGTTGGAGA 65
|||||||||||||||||||||| ||| ||||||||||| | | | |||||| |||||||
Sbjct 83 TTGTGTAGAGAAAATGGGTTCAAATGCGTCAGATCCTGC-AGTGT-TGAAGACTTGGAGA 140
Query 66 AAGACTCCTCCTCCTTCTTCTTCTCTTGTCAGAATTTCTCAGAATGCTAACGACAAATAC 125
| || ||||||||| ||| ||||||||||| |||||||| ||||||||| ||||||
Sbjct 141 AGGA---ATCCTCCTTCCTCTACTCTTGTCAGACTTTCTCAGCTTGCTAACGAGAAATAC 197
Query 126 GAATCCCCTCCTTTCTCTTCCGGTGGACACAACTGGAGATTGGTTGTTTACCCAAAAGGA 185
|| ||||||||||||||||| |||| |||||||||||||||||||||| |||||||||||
Sbjct 198 GAGTCCCCTCCTTTCTCTTCTGGTGCACACAACTGGAGATTGGTTGTTCACCCAAAAGGA 257
Query 186 AATGAAGAGGACAATGGAAG-GGGCTTTGTTTCAATGTATGTGGAATGTCTCTCATCGAC 244
|| |||| |||||||||||| ||| ||||| || |||||||||||||| |||||||||||
Sbjct 258 AACGAAGCGGACAATGGAAGTGGG-TTTGTGTCTATGTATGTGGAATGCCTCTCATCGAC 316
Query 245 AACACCACCCATTGATGTGTTTG-CTCATCTCACTTTCTTTGTCTTTAGCGAGGAAGAGA 303
||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||||
Sbjct 317 AACACCACCCATTGATGTGTTTGCCT-ATCTCACTTTCTTTGTCTTCAGCGAGGAAGAGA 375
Query 304 AGAAGTACCTCTCTATTCAAGATGTTGAAGTTAAACGTTTCAATTCTTCTAAAACGGTTT 363
|||||||||||||| |||||||||||||||| || |||||||||||||| ||||||||||
Sbjct 376 AGAAGTACCTCTCTTTTCAAGATGTTGAAGTGAAGCGTTTCAATTCTTCAAAAACGGTTT 435
Query 364 GGGGATTGTCACAAGCTC-TCTCGGTTGAAACACTCAAAGACCGTGCAAAGGGATTTATC 422
||||||||||| |||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 436 GGGGATTGTCAAAAGCTCTTC-CGGTTGAAACACTCAAAGACCGTGCAAAGGGATTTATC 494
Query 423 TTGTACGGAGAAGAACATGAGTTTGGTGCTCATGTGAAGATGGCTTCACCACCCGTCC-C 481
|||||||| |||||||||||||| ||||||||||||||||| | ||||| ||||| || |
Sbjct 495 TTGTACGGTGAAGAACATGAGTTCGGTGCTCATGTGAAGATTGTTTCACGACCCG-CCTC 553
Query 482 TGTTGATTT-GAATCTCCCTTTTCACAAATTCTCTTGGAGC-ATTCGTGATTTCTCTGGT 539
| ||| | || |||||||||||||||||||||||||| | |||||||||||| || |
Sbjct 554 TTTTGGTGAAGA-TCTCCCTTTTCACAAATTCTCTTGGA-CTATTCGTGATTTCGCTCTT 611
Query 540 CTGAAACAGAATGATTGCGTTTCCAAAACCTTTCACATGGGAGAAAAGAATTGGACTCTA 599
||| |||||||||||| ||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 612 CTGGAACAGAATGATTACGTATCCAAAACCTTTCACATGGGAGAAAAGGATTGGACTCTA 671
Query 600 ACCTTGTATCCAAAGGGAGACTCTGAGACAGATGGCCAGTTACAC-CAGAATTTGCTTTT 658
| |||||||||||||| ||||||||| |||||| | ||||| | ||| |||||| |||
Sbjct 672 AAGTTGTATCCAAAGGGGGACTCTGAGGCAGATGACAAGTTA-ATTCAGCATTTGCATTT 730
Query 659 AGCTGACGGTGAAACTTTAATGAGGGGTGAGATGATTTTTGTGCGAGTACAAC-TGCGGG 717
||||||||||||||||||| | ||||||| ||||||| ||||||||| ||| || ||
Sbjct 731 AGCTGACGGTGAAACTTTAGCCAAGGGTGAGCTGATTTTCGTGCGAGTA-AACCTGAAGG 789
Query 718 TTCTTGACCCGCATGGATCCAATCACCTAACAG-AATCCCTTAACTGTTGGGTCATGGCC 776
|||| ||||||| |||||||||||||||||||| || || ||||||||||| ||||| |
Sbjct 790 TTCTAGACCCGCGTGGATCCAATCACCTAACAGGAAGCC-TTAACTGTTGGCTCATGAAC 848
Query 777 TCGACCAGAGCGTATGGTCTTCCTCAATCCATGCCTTGT-GCTGAAATTCAGGAGGCTTA 835
|||| || ||||| |||||||||||||||||| ||| | | | ||| | ||| ||||||
Sbjct 849 TCGAACAAAGCGTGGGGTCTTCCTCAATCCATGTCTT-TCGATAAAAATGAGGGGGCTTA 907
Query 836 CTTGGACCGTGAAGATACGTTGAAGGTAGAGATCGAATGTGAAGTTGTTAAGGCC-ATCA 894
|||||| ||||||| || ||| |||||||||| ||||||||| || || || || |
Sbjct 908 CTTGGATCGTGAAGGGACTTTGGAGGTAGAGATTGAATGTGAAATTAAAAACTCCCAT-A 966
Query 895 AAAACAATCCCTTCTTTTAGGATATC 920
||||| ||||||||||||||||||||
Sbjct 967 AAAACCATCCCTTCTTTTAGGATATC 992
> AT1G65370.1 | Symbols: | TRAF-like family protein | chr1:24284469-24286145
REVERSE LENGTH=1190
Length=1190
Score = 806 bits (436), Expect = 0.0
Identities = 753/902 (83%), Gaps = 37/902 (4%)
Strand=Plus/Plus
Query 1 TGCAACATTGTGTAGAGAAAATGGGTTCATGTGCATCAGATCCTGCGAT-TCTGAAGAGT 59
||||||||| |||||||||||||||||||| |||||||||| |||| || | |||||| |
Sbjct 47 TGCAACATTTTGTAGAGAAAATGGGTTCATATGCATCAGATTCTGCAATGT-TGAAGACT 105
Query 60 TGGAGAAAGACTCCTCCTCCTTCTTCTTCTCTTGTCAGAATTTCTCAGAATGC-T-A--A 115
|||||||||||||||||| | |||| ||||||||||||| |||| || | | | | |
Sbjct 106 TGGAGAAAGACTCCTCCTTCGTCTTGTTCTCTTGTCAGACTTTCACATCTTTCTTCACTA 165
Query 116 CGA-CA-A-AT-ACGAATCCCCTCCTTTCTCTTCCGGTGGACACAA-CTGGAGATTGGTT 170
| | || | || || || | || | ||| || | | || | |||||||||||
Sbjct 166 CAAGCATATATAACTAA-GAAAT-GTTGC-CTT-TTTTGTA-AAAATCAGGAGATTGGTT 220
Query 171 GTTTACCCAAAAGGAAATGAAGAGGACAATGGAAGGGGCTTTGTTTCAATGTATGTGGAA 230
||||||||||||||||| |||||||||||||||| ||||||||| || ||||||||||||
Sbjct 221 GTTTACCCAAAAGGAAACGAAGAGGACAATGGAAAGGGCTTTGTGTCTATGTATGTGGAA 280
Query 231 TGTCTCTCATCGACAACACCACCCATTGATGTGTTTGCTCATCTCACTTTCTTTGTCTTT 290
||||||||||| ||||||||||||||||||||||||| | ||||| ||||||||||||||
Sbjct 281 TGTCTCTCATCCACAACACCACCCATTGATGTGTTTGATTATCTCTCTTTCTTTGTCTTT 340
Query 291 AGCGAGGAAGAGAAGAAGTACCTCTCTATTCAAGATGTTGAAGTTAAACGTTTCAATTCT 350
| | || |||| || ||||||||||| || ||||||||||||||||| ||||||| ||||
Sbjct 341 AACAAGAAAGACAACAAGTACCTCTCAATCCAAGATGTTGAAGTTAAGCGTTTCAGTTCT 400
Query 351 TCTAAAACGGTTTGGGGATTGTCACAAGCTCTCTCGGTTGAAACACTCAAAGACCGTGCA 410
||||||||||||||||||||| || ||||| | ||| |||||||| ||| |||| ||||
Sbjct 401 TCTAAAACGGTTTGGGGATTGCCAAAAGCTATGTCGCTTGAAACATTCACTGACCCTGCA 460
Query 411 AAGGGATTTATCTTGTACGGAGAAGAACATGAGTTTGGTGCTCATGTGAAGATGGCTTCA 470
|||||||||||| || | |||||| | |||||||||||||||||||||||| ||||||
Sbjct 461 AAGGGATTTATCGTGGAAGGAGAACCATGTGAGTTTGGTGCTCATGTGAAGATTGCTTCA 520
Query 471 CCACCCGTCCCTGTTGATTTGAATCTCCCTTTTCACAAATTCTCTTGGAGCATTCGTGAT 530
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 521 TCACCCGTCCCTGTTGATGAGAATCTCCCTTTTCACAAATTCTCTTGGAGCATTCGTGAT 580
Query 531 TTCTCTGGTCTGAAACAGAATGATTGCGTTTCCAAAACCTTT-CACATGGGAGAAAAGAA 589
||||||| ||||||||||||||||||| | || ||||||||| || ||||||| ||||||
Sbjct 581 TTCTCTGTTCTGAAACAGAATGATTGCATATCTAAAACCTTTGCA-ATGGGAGGAAAGAA 639
Query 590 TTGGACTCTAACCT-TGTATCCAAAGGGAGACTCTGAGACAGATGGCCAGTTACACCA-G 647
|||||||||||| | ||||||||||||||||||||||| ||||| | |||| | || |
Sbjct 640 TTGGACTCTAAC-TGTGTATCCAAAGGGAGACTCTGAGGCAGATAACGAGTT-CTGCAAG 697
Query 648 AATTTGCTTTTAGCTGACGGTGAAA-CTTTAAT-GAGGGGTGAGATGATTTTTGTGCGAG 705
| |||| |||||||||||||||| ||| | | | ||||||||||||| |||||||
Sbjct 698 TACTTGCATTTAGCTGACGGTGAAGTCTT-A-TCGCCTGGTGAGATGATTTCCGTGCGAG 755
Query 706 TACAACTGCGGGTTCTT-GACCCGCATGGATCCAATCACCTAACAGAATCCCTT-AACTG 763
|||||| ||| | || ||||||| ||||||||| ||| ||||| | ||| |||
Sbjct 756 CACAACTAAGGGCT-TTAGACCCGCGTGGATCCAAACACAAAACAGTCTGGCTTCAACAA 814
Query 764 TTGGGTCATGGCCTCGACCAGAGCGTATGG-TCTTCCTCAATCCATGCCTTGT-GCTGAA 821
| || ||||||| |||||| |||| | || | ||||||||||| || ||| | |||||
Sbjct 815 T-GGATCATGGCAGCGACCAAAGCG-AGGGGTATTCCTCAATCCTTGTCTT-TAGCTGAT 871
Query 822 ATTCAGGAGGCTTACTTGGACCGTGAAGATACGTTGAAGGTAGAGATCGAATGTGAAGTT 881
||||||||||||||||||| ||||||||| ||||| || ||||||||||||||||||
Sbjct 872 CTTCAGGAGGCTTACTTGGA---TGAAGATACTTTGAATGTGGAGATCGAATGTGAAGTT 928
Query 882 GT 883
||
Sbjct 929 GT 930
> AT1G65050.1 | Symbols: | TRAF-like superfamily protein | chr1:24164286-24165679
REVERSE LENGTH=687
Length=687
Score = 547 bits (296), Expect = 6e-155
Identities = 375/411 (91%), Gaps = 13/411 (3%)
Strand=Plus/Plus
Query 21 ATGGGTTC-ATGTGCATCAGATCCTGCGAT-TCTGAAGAGTTGGAGAAAGACTCCTCCTC 78
|||||||| | | ||||||||| |||| || | |||| | |||||||| || | ||||
Sbjct 1 ATGGGTTCAAAG-GCATCAGATTCTGCAATGT-TGAAAACTTGGAGAAGGA--AC-CCTC 55
Query 79 CTTCTTCTTCTCTTGTCAGAATTTCTCAGAATGCTAACGACAAATACGAATCCCCTCCTT 138
|||||||||||||||||||| | |||||| |||||||||||||||||||||||||||||
Sbjct 56 CTTCTTCTTCTCTTGTCAGACTCTCTCAGCTTGCTAACGACAAATACGAATCCCCTCCTT 115
Query 139 TCTCTTCCGGTGGACACAACTGGAGATTGGTTGTTTACCCAAAAGGAAATGAAGAGGACA 198
|||| ||||||||||||||||||||||||||||||||||| |||||||| |||| ||||
Sbjct 116 TCTCGTCCGGTGGACACAACTGGAGATTGGTTGTTTACCCGAAAGGAAACGAAGCTGACA 175
Query 199 ATGGAAGGGGCTTTGTTTCAATGTATGTGGAATGTCTCTCATCGACAACACCACCCATTG 258
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 176 ATGGAAGGGGCTTTGTTTCAATGTATGTGGAATGCCTCTCATCGACAACACCACCCATTG 235
Query 259 ATGTGTTTGCTC-ATCTCACTTTCTTTGTCTTTAGCGAGGAAGAGAAGAAGTACCTCTCT 317
||||||||| || ||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 236 ATGTGTTTG-TCTATCTCACTTTCTTTGTCTTTAGCGAAGAAGAGAAGAGGTACCTCTCT 294
Query 318 ATTCAAGATGTTGAAGTTAA-ACGTTTCAATTCTTCTAAAACGGTTTGGGGATTGTCACA 376
|||||||||||||||||||| | | |||||||| || |||||||||||||||||||||||
Sbjct 295 ATTCAAGATGTTGAAGTTAAGA-GGTTCAATTCCTCAAAAACGGTTTGGGGATTGTCACA 353
Query 377 AGCTC-TCTCGGTTGAAACACTCAAAGACCGTGCAAAGGGATTTATCTTGT 426
|| || || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 354 AGTTCTTC-CGGTTGAAACACTCAAAGACCGTGCAAAGGGATTTATCTTGT 403
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45662839623
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5