BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925398
Length=934
Score E
Sequences producing significant alignments: (Bits) Value
AT1G65150.1 | Symbols: | TRAF-like family protein | chr1:24203... 1171 0.0
AT1G65370.1 | Symbols: | TRAF-like family protein | chr1:24284... 701 0.0
AT1G65050.1 | Symbols: | TRAF-like superfamily protein | chr1:... 525 3e-148
> AT1G65150.1 | Symbols: | TRAF-like family protein | chr1:24203841-24205775
REVERSE LENGTH=1312
Length=1312
Score = 1171 bits (634), Expect = 0.0
Identities = 837/934 (90%), Gaps = 17/934 (2%)
Strand=Plus/Plus
Query 8 TTGTGTAGAGAAAATGGGTTCAAATGTATCAGATCCTGCGA-TGTTGAAGAGTTGGAGAA 66
|||||||||||||||||||||||||| ||||||||||| | ||||||||| ||||||||
Sbjct 83 TTGTGTAGAGAAAATGGGTTCAAATGCGTCAGATCCTGC-AGTGTTGAAGACTTGGAGAA 141
Query 67 AGACTCCTCCTCCTGCTTCTTCTCTTGTCAGACTTTCTCAGCTTGCCAACGATAAATACG 126
|| ||||||| | | ||| ||||||||||||||||||||||||| ||||| |||||||
Sbjct 142 GGAATCCTCCT--T-CCTCTACTCTTGTCAGACTTTCTCAGCTTGCTAACGAGAAATACG 198
Query 127 AGTCCCCTCCTTTCGTC-TCCGGTGGACACAACTGGAGATTGGTTGTTTACCCGAAAGGA 185
|||||||||||||| || || |||| |||||||||||||||||||||| |||| ||||||
Sbjct 199 AGTCCCCTCCTTTC-TCTTCTGGTGCACACAACTGGAGATTGGTTGTTCACCCAAAAGGA 257
Query 186 AACGAAGAGGACAATGGAAGTGGATTTGTTTCAATGTATGTGGAATGTCTCTCATCCACA 245
||||||| ||||||||||||||| ||||| || |||||||||||||| |||||||| |||
Sbjct 258 AACGAAGCGGACAATGGAAGTGGGTTTGTGTCTATGTATGTGGAATGCCTCTCATCGACA 317
Query 246 ACACCACCCATTGATGTGTTTACTTATCTTACTTTCTTTGTCTTTAGCGAGGAAGAGAAG 305
||||||||||||||||||||| | ||||| |||||||||||||| |||||||||||||||
Sbjct 318 ACACCACCCATTGATGTGTTTGCCTATCTCACTTTCTTTGTCTTCAGCGAGGAAGAGAAG 377
Query 306 AAGTACCTCTCTATTCAAGATGTGGAAGTGAAGCGTTTCAATTCTTCAAAAACGGTTTGG 365
|||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 378 AAGTACCTCTCTTTTCAAGATGTTGAAGTGAAGCGTTTCAATTCTTCAAAAACGGTTTGG 437
Query 366 GGATTGTCAAAAGCTCTTTCGATTGAAACACTCAAAGACCGTGCAAAGGGCTTTATCTTG 425
|||||||||||||||||| || |||||||||||||||||||||||||||| |||||||||
Sbjct 438 GGATTGTCAAAAGCTCTTCCGGTTGAAACACTCAAAGACCGTGCAAAGGGATTTATCTTG 497
Query 426 TACGGAGAACTACATGAGTTTGGTGCTCATGTGAAGATTGTTTCACGACCCGACTCTTTT 485
||||| ||| ||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 498 TACGGTGAAGAACATGAGTTCGGTGCTCATGTGAAGATTGTTTCACGACCCGCCTCTTTT 557
Query 486 GGTGAAGATCTCCCTTTTCACAAATTCTCATGGACTATTCGTGATTTCTCCCTTCTTAGA 545
||||||||||||||||||||||||||||| |||||||||||||||||| | ||||| ||
Sbjct 558 GGTGAAGATCTCCCTTTTCACAAATTCTCTTGGACTATTCGTGATTTCGCTCTTCTG-GA 616
Query 546 -CAGAATGATTGTGTTTCGAAAACCTTTCACATGGGAGAAAAAGATTGGACTCTAACTTT 604
|||||||||| || || ||||||||||||||||||||||| ||||||||||||| ||
Sbjct 617 ACAGAATGATTACGTATCCAAAACCTTTCACATGGGAGAAAAGGATTGGACTCTAAAGTT 676
Query 605 GTTTCCAAAGGGAGACTCTAGAG-CAGATGGCGAGTTA-TCCCAGCATTTGCATTTAACT 662
|| ||||||||| |||||| ||| |||||| | ||||| | | |||||||||||||| ||
Sbjct 677 GTATCCAAAGGGGGACTCT-GAGGCAGATGACAAGTTAATTC-AGCATTTGCATTTAGCT 734
Query 663 GACAATGATACTTTATTGAAGGGTGAGCTGATTTTCGTGCGAGTAAACCTCAAGGTTCTC 722
||| ||| |||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 735 GACGGTGAAACTTTAGCCAAGGGTGAGCTGATTTTCGTGCGAGTAAACCTGAAGGTTCTA 794
Query 723 GACCCGCGTGGATCCAATCACCTAACAGGAAGCCTTCACAGTTGGCTCATGAACTCGAAC 782
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 795 GACCCGCGTGGATCCAATCACCTAACAGGAAGCCTTAACTGTTGGCTCATGAACTCGAAC 854
Query 783 AAAGCAAGGGGTAAGACC-CAGTCCATGTCTTTAGATAAAATTCAGGGGGCTTACTTGGA 841
||||| ||||| || || ||||||||||| ||||||| | ||||||||||||||||
Sbjct 855 AAAGCGTGGGGTCTT-CCTCAATCCATGTCTTTCGATAAAAATGAGGGGGCTTACTTGGA 913
Query 842 CCGTGAAGGTACTTTGGAGGTGGAGATCGAATGTGAAGTTGTTAACTCC-ATCAAAAACC 900
|||||||| ||||||||||| ||||| ||||||||| || |||||| || |||||||
Sbjct 914 TCGTGAAGGGACTTTGGAGGTAGAGATTGAATGTGAAATTAAAAACTCCCAT-AAAAACC 972
Query 901 ATCCCTTCTTTTAGGATATCTACCATGCCATGTC 934
|||||||||||||||||||| |||||| || |||
Sbjct 973 ATCCCTTCTTTTAGGATATCAACCATGTCAGGTC 1006
> AT1G65370.1 | Symbols: | TRAF-like family protein | chr1:24284469-24286145
REVERSE LENGTH=1190
Length=1190
Score = 701 bits (379), Expect = 0.0
Identities = 746/916 (81%), Gaps = 53/916 (6%)
Strand=Plus/Plus
Query 1 TGCAACATTGTGTAGAGAAAATGGGTTCAAATGTATCAGATCCTGCGATGTTGAAGAGTT 60
||||||||| ||||||||||||||||||| ||| ||||||| |||| |||||||||| ||
Sbjct 47 TGCAACATTTTGTAGAGAAAATGGGTTCATATGCATCAGATTCTGCAATGTTGAAGACTT 106
Query 61 GGAGAAAGACTCCTCC-TCCTGCTTCTTCTCTTGTCAGACTTTCTCAGCTTGC--CA--A 115
|||||||||||||||| || | ||| |||||||||||||||||| || ||| | || |
Sbjct 107 GGAGAAAGACTCCTCCTTCGT-CTTGTTCTCTTGTCAGACTTTCACATCTTTCTTCACTA 165
Query 116 C--G-ATAAAT-AC-GAGTCCCCTCCTTTCGTCTCCGGTGGACACAA-CTGGAGATTGGT 169
| | ||| || || || | || | || || | | || | ||||||||||
Sbjct 166 CAAGCATATATAACTAAG--AAAT--GTT-GCCTTTTTTGTA-AAAATCAGGAGATTGGT 219
Query 170 TGTTTACCCGAAAGGAAACGAAGAGGACAATGG-AAGTGGATTTGTTTCAATGTATGTGG 228
||||||||| ||||||||||||||||||||||| ||| || ||||| || ||||||||||
Sbjct 220 TGTTTACCCAAAAGGAAACGAAGAGGACAATGGAAAG-GGCTTTGTGTCTATGTATGTGG 278
Query 229 AATGTCTCTCATCCACAACACCACCCATTGATGTGTTT-ACTTATCT-TACTTTCTTTGT 286
|||||||||||||||||||||||||||||||||||||| | |||||| | ||||||||||
Sbjct 279 AATGTCTCTCATCCACAACACCACCCATTGATGTGTTTGA-TTATCTCT-CTTTCTTTGT 336
Query 287 CTTTAGCGAGGAAGAGAAGAAGTACCTCTCTATTCAAGATGTGGAAGTGAAGCGTTTCAA 346
||||| | || |||| || ||||||||||| || |||||||| ||||| ||||||||||
Sbjct 337 CTTTAACAAGAAAGACAACAAGTACCTCTCAATCCAAGATGTTGAAGTTAAGCGTTTCAG 396
Query 347 TTCTTCAAAAACGGTTTGGGGATTGTCAAAAGCTCTTTCGATTGAAACACTCAAAGACCG 406
|||||| |||||||||||||||||| |||||||| | ||| |||||||| ||| ||||
Sbjct 397 TTCTTCTAAAACGGTTTGGGGATTGCCAAAAGCTATGTCGCTTGAAACATTCACTGACCC 456
Query 407 TGCAAAGGGCTTTATCTTGTACGGAGAACTACATGAGTTTGGTGCTCATGTGAAGATTGT 466
||||||||| |||||| || | ||||||| | ||||||||||||||||||||||||||
Sbjct 457 TGCAAAGGGATTTATCGTGGAAGGAGAACCATGTGAGTTTGGTGCTCATGTGAAGATTGC 516
Query 467 TTCA-CGACCCGACTCTTTTGGTGAAGA-TCTCCCTTTTCACAAATTCTCATGGA-CTAT 523
|||| | ||||| | || ||| ||| || ||||||||||||||||||||| |||| | ||
Sbjct 517 TTCATC-ACCCGTCCCTGTTGATGA-GAATCTCCCTTTTCACAAATTCTCTTGGAGC-AT 573
Query 524 TCGTGATTTCTCCCTTCTTAGACAGAATGATTGTGTTTCGAAAACCTTT-CACATGGGAG 582
|||||||||||| |||| | |||||||||||| | || ||||||||| || |||||||
Sbjct 574 TCGTGATTTCTCTGTTCTGAAACAGAATGATTGCATATCTAAAACCTTTGCA-ATGGGAG 632
Query 583 AAAAAGA-TTGGACTCTAACTTTGTTTCCAAAGGGAGACTCTAGAG-CAGATGGCGAGTT 640
||| || ||||||||||||| ||| |||||||||||||||| ||| ||||| ||||||
Sbjct 633 GAAA-GAATTGGACTCTAACTGTGTATCCAAAGGGAGACTCT-GAGGCAGATAACGAGTT 690
Query 641 ATCCCAGCATTTGCATTTAACTGACAATGATACT-TTATTGAAGGGTGAGCTGATTTTCG 699
| | || | ||||||||| ||||| ||| | | |||| | |||||| |||||| ||
Sbjct 691 CTGCAAGTACTTGCATTTAGCTGACGGTGA-AGTCTTATCGCCTGGTGAGATGATTTCCG 749
Query 700 TGCGAGTA-AACCTCAAGG--TTCTCGACCCGCGTGGATCCAATCACCTAACAGGAAGCC 756
|||||| | ||| | |||| || | ||||||||||||||||| ||| ||||| | |
Sbjct 750 TGCGAGCACAAC-T-AAGGGCTT-TAGACCCGCGTGGATCCAAACACAAAACAGTCTGGC 806
Query 757 TTCA-CAGTTGGCTCATGA-ACTCGAACAAAGCAAGGGGTAAGACC-CAGTCCATGTCTT 813
|||| || | || ||||| | ||| |||||| ||||||| || || ||| ||||||
Sbjct 807 TTCAACAAT-GGATCATGGCAG-CGACCAAAGCGAGGGGTATT-CCTCAATCCTTGTCTT 863
Query 814 TAGATAAAATTCAGGGGGCTTACTTGGACCGTGAAGGTACTTTGGAGGTGGAGATCGAAT 873
||| | | |||||| |||||||||||| ||||| ||||||| | |||||||||||||
Sbjct 864 TAGCTGATCTTCAGGAGGCTTACTTGGA---TGAAGATACTTTGAATGTGGAGATCGAAT 920
Query 874 GTGAAGTTGTTAACTC 889
|||||||||| |||||
Sbjct 921 GTGAAGTTGTGAACTC 936
> AT1G65050.1 | Symbols: | TRAF-like superfamily protein | chr1:24164286-24165679
REVERSE LENGTH=687
Length=687
Score = 525 bits (284), Expect = 3e-148
Identities = 369/409 (90%), Gaps = 9/409 (2%)
Strand=Plus/Plus
Query 21 ATGGGTTCAAATGTATCAGATCCTGCGATGTTGAAGAGTTGGAGAAAG-ACTCCTCCTCC 79
||||||||||| | ||||||| |||| |||||||| | |||||||| | || ||||||
Sbjct 1 ATGGGTTCAAAGGCATCAGATTCTGCAATGTTGAAAACTTGGAGAAGGAAC-CCTCCT-- 57
Query 80 TGCTTCTTCTCTTGTCAGACTTTCTCAGCTTGCCAACGATAAATACGAGTCCCCTCCTTT 139
| ||||||||||||||||||| ||||||||||| ||||| |||||||| |||||||||||
Sbjct 58 T-CTTCTTCTCTTGTCAGACTCTCTCAGCTTGCTAACGACAAATACGAATCCCCTCCTTT 116
Query 140 CGTC-TCCGGTGGACACAACTGGAGATTGGTTGTTTACCCGAAAGGAAACGAAGAGGACA 198
| || ||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 117 C-TCGTCCGGTGGACACAACTGGAGATTGGTTGTTTACCCGAAAGGAAACGAAGCTGACA 175
Query 199 ATGGAAGTGGATTTGTTTCAATGTATGTGGAATGTCTCTCATCCACAACACCACCCATTG 258
||||||| || ||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 176 ATGGAAGGGGCTTTGTTTCAATGTATGTGGAATGCCTCTCATCGACAACACCACCCATTG 235
Query 259 ATGTGTTTA-CTTATCTTACTTTCTTTGTCTTTAGCGAGGAAGAGAAGAAGTACCTCTCT 317
|||||||| || |||| |||||||||||||||||||| |||||||||| ||||||||||
Sbjct 236 ATGTGTTTGTCT-ATCTCACTTTCTTTGTCTTTAGCGAAGAAGAGAAGAGGTACCTCTCT 294
Query 318 ATTCAAGATGTGGAAGTGAAGCGTTTCAATTCTTCAAAAACGGTTTGGGGATTGTCAAAA 377
||||||||||| ||||| ||| | |||||||| |||||||||||||||||||||||| ||
Sbjct 295 ATTCAAGATGTTGAAGTTAAGAGGTTCAATTCCTCAAAAACGGTTTGGGGATTGTCACAA 354
Query 378 GCTCTTTCGATTGAAACACTCAAAGACCGTGCAAAGGGCTTTATCTTGT 426
| |||| || |||||||||||||||||||||||||||| ||||||||||
Sbjct 355 GTTCTTCCGGTTGAAACACTCAAAGACCGTGCAAAGGGATTTATCTTGT 403
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45662839623
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5